View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4081_high_7 (Length: 448)
Name: NF4081_high_7
Description: NF4081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4081_high_7 |
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Alignment Details
Target: chr2 (Bit Score: 410; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 16 - 433
Target Start/End: Original strand, 40550332 - 40550749
Alignment:
| Q |
16 |
atcaaggaatgcaggtcttatccattgtataagtttgttagagaggaattggggactgaatttttaactggtgagaaaattaaatcaccaggagaagatt |
115 |
Q |
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| T |
40550332 |
atcaaggaatgcaggtcttatccattgtataagtttgttagagaggaattggggattgaatttttaactggtgagaaaattaaatcaccaggagaagatt |
40550431 |
T |
|
| Q |
116 |
ttgataaagttttgaatgcaattactcttggaaagataatagatccaatgtttgaatgccttaaggattgggatggtactccccttcctatagaatttca |
215 |
Q |
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| T |
40550432 |
ttgataaagttttgaatgcaattactcttggaaagataattgatccaatgtttgaatgccttaaggattgggatggtactccccttcctatagaatttca |
40550531 |
T |
|
| Q |
216 |
ttagtacaatgttttactagtattgcaatgtatttatcctgtaaggtaataggtatgcacagtggtttccttttgcttaagagaaaggaaatgtgttaat |
315 |
Q |
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| T |
40550532 |
ttagtacaatgttttactagtattgcaatgtatttatcctgtaaggtaataggtatgcacagtggtttccttttgcttaagagaaaggaaatgtgttaat |
40550631 |
T |
|
| Q |
316 |
atcatgtgttttaatatagaattttatttatgtatattaagaaattcaaacaaaaaagaaatcataaccagattcaattactgcacaagtatatgtttct |
415 |
Q |
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| T |
40550632 |
atcatgtgttttaatatagaattttatttatgtatattaagaaattcaaacaaaaaagaaatcataaccagattcaattactgcacaagtatatgtttct |
40550731 |
T |
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| Q |
416 |
gcgatcattcacataggg |
433 |
Q |
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| T |
40550732 |
gcgatcattcacataggg |
40550749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 16 - 217
Target Start/End: Original strand, 40560019 - 40560222
Alignment:
| Q |
16 |
atcaaggaatgcaggtcttatccattgtataagtttgttagagaggaattggggactgaatttttaactggtgagaaaattaaatcaccaggagaagatt |
115 |
Q |
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|||||||||||||||| ||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| ||| ||||||||||||||||||||| |
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| T |
40560019 |
atcaaggaatgcaggttgtatccgttgtataagtttgttagagaggaattgtggactgaatttttaactggtgaaaaagttaaatcaccaggagaagatt |
40560118 |
T |
|
| Q |
116 |
ttgataaagttttgaatgcaattactcttggaaagataatagatccaatgtttgaatgccttaaggattgggatggtactc--cccttcctatagaattt |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| | |||||||||||| ||| |
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| T |
40560119 |
ttgataaagttttgaatgcaattactcttggaaagataattgatccaatgtttgaatgccttaaggattgagatggtacacgtaccttcctatagatttt |
40560218 |
T |
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| Q |
214 |
catt |
217 |
Q |
| |
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|||| |
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| T |
40560219 |
catt |
40560222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 19 - 68
Target Start/End: Complemental strand, 28183804 - 28183755
Alignment:
| Q |
19 |
aaggaatgcaggtcttatccattgtataagtttgttagagaggaattggg |
68 |
Q |
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|||||||| ||||||||||||||||| ||||||||||||||||| ||||| |
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| T |
28183804 |
aaggaatgtaggtcttatccattgtacaagtttgttagagaggagttggg |
28183755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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