View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4081_low_12 (Length: 407)

Name: NF4081_low_12
Description: NF4081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4081_low_12
NF4081_low_12
[»] chr6 (5 HSPs)
chr6 (312-407)||(29486884-29486979)
chr6 (15-87)||(29477686-29477758)
chr6 (227-282)||(29486832-29486887)
chr6 (11-45)||(29527432-29527466)
chr6 (84-140)||(29479318-29479374)


Alignment Details
Target: chr6 (Bit Score: 60; Significance: 2e-25; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 312 - 407
Target Start/End: Original strand, 29486884 - 29486979
Alignment:
Q  312 cttcagtatatagttcagtttgatttttcacatcaaaaggactggtatcaatataaaccggaagaataagtctatatggtttaatgttgttgttct 407  Q
    ||||| ||||| || |||||||||||| ||||||| |||||||| |||||| |||||||||||||||||||||||||||||||  |||||||||||    
T  29486884 cttcactatatggtacagtttgattttgcacatcagaaggactgatatcaacataaaccggaagaataagtctatatggtttagggttgttgttct 29486979  T

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Target: chr6; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 15 - 87
Target Start/End: Original strand, 29477686 - 29477758
Alignment:
Q  15 gaggttaggtcaaactaaatgcagttatttccacaactacatacttattcttatcctattacagtatagaatt 87  Q
    |||||||| |||||||||||||||||||||||||| ||| ||||||||||||||| ||||| |||||| ||||    
T  29477686 gaggttagttcaaactaaatgcagttatttccacacctatatacttattcttatcttattatagtataaaatt 29477758  T

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Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 227 - 282
Target Start/End: Original strand, 29486832 - 29486887
Alignment:
Q  227 aagttagctacttgagatagagcgttcctccatttaaacaatttattcttgtcttc 282  Q
    |||||||||||  |||||||||||||||||||||||| ||||||||| ||||||||    
T  29486832 aagttagctacacgagatagagcgttcctccatttaatcaatttattattgtcttc 29486887  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 11 - 45
Target Start/End: Original strand, 29527432 - 29527466
Alignment:
Q  11 cagagaggttaggtcaaactaaatgcagttatttc 45  Q
    ||||||||||||||||||||||||| |||||||||    
T  29527432 cagagaggttaggtcaaactaaatgtagttatttc 29527466  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 84 - 140
Target Start/End: Original strand, 29479318 - 29479374
Alignment:
Q  84 aatttacattgtatggtgtacaatacagctcaagaagaaagcaaacattctcatcaa 140  Q
    |||||||||| |||||  |||||||||  |||||||||||| |||||||||| ||||    
T  29479318 aatttacattttatggcatacaatacaattcaagaagaaaggaaacattctcttcaa 29479374  T

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