View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4081_low_14 (Length: 380)

Name: NF4081_low_14
Description: NF4081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4081_low_14
NF4081_low_14
[»] chr1 (10 HSPs)
chr1 (14-366)||(30018406-30018761)
chr1 (35-149)||(31142429-31142542)
chr1 (96-201)||(8258905-8259008)
chr1 (41-147)||(11985447-11985553)
chr1 (96-212)||(39065298-39065414)
chr1 (83-148)||(43856349-43856414)
chr1 (83-148)||(42486432-42486497)
chr1 (30-87)||(49632833-49632889)
chr1 (135-202)||(31142434-31142498)
chr1 (39-88)||(49632936-49632984)
[»] chr4 (16 HSPs)
chr4 (30-202)||(4873047-4873218)
chr4 (40-188)||(21538844-21538990)
chr4 (55-201)||(3703579-3703725)
chr4 (33-207)||(2605365-2605523)
chr4 (45-208)||(53860773-53860936)
chr4 (66-150)||(44307841-44307926)
chr4 (90-201)||(12328962-12329072)
chr4 (99-146)||(24680788-24680835)
chr4 (96-191)||(43136827-43136922)
chr4 (33-127)||(54734318-54734412)
chr4 (91-150)||(25411625-25411685)
chr4 (96-150)||(32430546-32430600)
chr4 (40-88)||(2605471-2605518)
chr4 (83-127)||(43770095-43770139)
chr4 (35-87)||(53860775-53860826)
chr4 (35-87)||(54923066-54923117)
[»] scaffold0110 (2 HSPs)
scaffold0110 (33-190)||(11447-11603)
scaffold0110 (33-190)||(19184-19340)
[»] chr8 (6 HSPs)
chr8 (39-161)||(9040882-9041003)
chr8 (33-191)||(25939302-25939462)
chr8 (39-141)||(4252611-4252712)
chr8 (34-212)||(33432048-33432228)
chr8 (96-144)||(28798970-28799018)
chr8 (133-202)||(9040936-9041002)
[»] chr7 (7 HSPs)
chr7 (90-202)||(37701249-37701361)
chr7 (40-181)||(48073031-48073172)
chr7 (35-150)||(5617894-5618009)
chr7 (99-151)||(31736986-31737038)
chr7 (96-147)||(21311757-21311808)
chr7 (35-126)||(22555348-22555440)
chr7 (69-124)||(18951038-18951094)
[»] chr6 (8 HSPs)
chr6 (69-173)||(22996956-22997061)
chr6 (69-173)||(23791340-23791445)
chr6 (66-173)||(18142381-18142489)
chr6 (33-144)||(13613743-13613853)
chr6 (76-190)||(30351451-30351565)
chr6 (99-191)||(30015061-30015152)
chr6 (83-150)||(12120144-12120211)
chr6 (83-150)||(16185300-16185367)
[»] chr5 (11 HSPs)
chr5 (35-160)||(8367019-8367143)
chr5 (54-192)||(14613553-14613692)
chr5 (76-191)||(6706278-6706393)
chr5 (33-89)||(10818874-10818929)
chr5 (83-151)||(30513854-30513922)
chr5 (83-151)||(30554194-30554262)
chr5 (135-202)||(8367024-8367088)
chr5 (110-150)||(14123041-14123081)
chr5 (76-150)||(12075925-12076000)
chr5 (153-191)||(4639526-4639564)
chr5 (154-211)||(28976712-28976770)
[»] chr3 (4 HSPs)
chr3 (113-192)||(26452804-26452883)
chr3 (135-211)||(26452897-26452974)
chr3 (33-148)||(31070665-31070780)
chr3 (113-182)||(32609387-32609456)
[»] chr2 (13 HSPs)
chr2 (36-201)||(41324892-41325057)
chr2 (33-108)||(22536968-22537043)
chr2 (96-146)||(12232342-12232392)
chr2 (104-178)||(37629600-37629673)
chr2 (39-127)||(8842416-8842504)
chr2 (26-106)||(13793660-13793742)
chr2 (33-153)||(20897330-20897450)
chr2 (83-148)||(25297315-25297380)
chr2 (135-201)||(13793675-13793741)
chr2 (76-211)||(9745338-9745475)
chr2 (135-196)||(39994443-39994503)
chr2 (96-144)||(4984000-4984048)
chr2 (36-88)||(41325011-41325062)


Alignment Details
Target: chr1 (Bit Score: 271; Significance: 1e-151; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 14 - 366
Target Start/End: Complemental strand, 30018761 - 30018406
Alignment:
Q  14 gaagataacttcctatgaggcttgcttttttgacatccattgtttcctagaaaacacatgggaatgaccaaaaacccaacgatagttaactaccgtcggt 113  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| || |    
T  30018761 gaagataacttcctacgaggcttgcttttttgacatccattgtttcctagaaaacacatggaaatgaccaaaaacccaacggtagttaactaccgccgat 30018662  T
Q  114 tttctagttataagcccgcgatagttaactaccgctgaagtgtttttgatcattttcatgcgtttctaggaaacaatggttgtcaaaaagcaattctcac 213  Q
    ||||||||||||||| ||||||||||||||||||||  |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  30018661 tttctagttataagcacgcgatagttaactaccgcttgagtgtttttgatcattttcatgcgcttctaggaaacaatggttgtcaaaaagcaattctcac 30018562  T
Q  214 ttccgatagcattgaaatgtgcatccaataggtctgccgtggacattttaggaatttttgggatcatatgagcaatatggggggcgtaaacagcaatttc 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30018561 ttccgatagcattgaaatgtgcatccaataggtctgccgtggacattttaggaatttttgggatcatatgagcaatatggggggcgtaaacagcaatttc 30018462  T
Q  314 a---nnnnnnnnncttgtaggacaacaatgccaagcccactcaaaaatcttctcat 366  Q
    |            ||||||  |||||||||||||||||||||||||||||||||||    
T  30018461 atttttttttcttcttgtaaaacaacaatgccaagcccactcaaaaatcttctcat 30018406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 35 - 149
Target Start/End: Original strand, 31142429 - 31142542
Alignment:
Q  35 ttgcttttttgacatccattgtttcctagaaaacacatgggaatgaccaaaaacccaacgatagttaactaccgtcggttttctagttataagcccgcga 134  Q
    |||||||||||||||||||| |||| |||||| ||||||| ||| | ||||||| || || |||||||||| ||||||||||| |||||||||   | |     
T  31142429 ttgcttttttgacatccattatttcatagaaa-cacatggaaataatcaaaaactcagcggtagttaactaacgtcggttttccagttataagttggtgg 31142527  T
Q  135 tagttaactaccgct 149  Q
    |||||||||||||||    
T  31142528 tagttaactaccgct 31142542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 96 - 201
Target Start/End: Complemental strand, 8259008 - 8258905
Alignment:
Q  96 tagttaactaccgtcggttttctagttataagcccgcgatagttaactaccgctgaagtgtttttgatcattttcatgcgtttctaggaaacaatggttg 195  Q
    |||||| ||| |||| ||||||||||||||||||  | ||||||||||||||||| ||| |||||  ||||||||||| |||| ||||||||||||| ||    
T  8259008 tagttacctatcgtcagttttctagttataagccaacaatagttaactaccgctg-agt-tttttagtcattttcatgtgtttttaggaaacaatggatg 8258911  T
Q  196 tcaaaa 201  Q
    | ||||    
T  8258910 tgaaaa 8258905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 41 - 147
Target Start/End: Original strand, 11985447 - 11985553
Alignment:
Q  41 ttttgacatccattgtttcctagaaaacacatgggaatgaccaaaaacc-caacgatagttaactaccgtcggttttctagttataagcccgcgatagtt 139  Q
    |||| ||||| ||||||| ||||||| ||||||  |||||||||||| | || || ||||||| ||| ||||| |||||||||||||| | |||||||||    
T  11985447 ttttcacatctattgttttctagaaa-cacatgaaaatgaccaaaaaactcatcggtagttaattactgtcggatttctagttataagtcagcgatagtt 11985545  T
Q  140 aactaccg 147  Q
    ||||||||    
T  11985546 aactaccg 11985553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 96 - 212
Target Start/End: Complemental strand, 39065414 - 39065298
Alignment:
Q  96 tagttaactaccgtcggttttctagttataagcccgcgatagttaactaccgctgaagtgtttttgatcattttcatgcgtttctaggaaacaatggttg 195  Q
    |||||||||| |  || |||| |||||||||| | ||| |||||||||| | ||||||||||||| ||||||| |||  ||||||||| |||||||| ||    
T  39065414 tagttaactatcaccgattttttagttataagtcagcg-tagttaactatcactgaagtgttttttatcatttccatatgtttctagggaacaatggatg 39065316  T
Q  196 tcaa-aaagcaattctca 212  Q
    |||| |||| ||||||||    
T  39065315 tcaacaaagtaattctca 39065298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 83 - 148
Target Start/End: Original strand, 43856349 - 43856414
Alignment:
Q  83 aaaaacccaacgatagttaactaccgtcggttttctagttataagcccgcgatagttaactaccgc 148  Q
    |||||||| ||| |||||| ||||||||||||||||||||||||| | ||| || |||||||||||    
T  43856349 aaaaaccctacggtagttacctaccgtcggttttctagttataagtcagcggtaattaactaccgc 43856414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 83 - 148
Target Start/End: Complemental strand, 42486497 - 42486432
Alignment:
Q  83 aaaaacccaacgatagttaactaccgtcggttttctagttataagcccgcgatagttaactaccgc 148  Q
    ||||| ||| |||||||||||| | | |||||||||||||||||||| ||  ||||||||||||||    
T  42486497 aaaaatccagcgatagttaactgctgccggttttctagttataagccagcagtagttaactaccgc 42486432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 30 - 87
Target Start/End: Original strand, 49632833 - 49632889
Alignment:
Q  30 gaggcttgcttttttgacatccattgtttcctagaaaacacatgggaatgaccaaaaa 87  Q
    ||||||||||||||| ||||| |||||||||||| |||||||| | ||||||||||||    
T  49632833 gaggcttgctttttttacatctattgtttcctag-aaacacatagaaatgaccaaaaa 49632889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 202
Target Start/End: Complemental strand, 31142498 - 31142434
Alignment:
Q  135 tagttaactaccgctgaagtgtttttgatcattttcatgcgtttctaggaaacaatggttgtcaaaaa 202  Q
    |||||||||||||||||   ||||||||| |||| |||| ||||||| |||| ||||| |||||||||    
T  31142498 tagttaactaccgctga---gtttttgattatttccatgtgtttctatgaaataatggatgtcaaaaa 31142434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 88
Target Start/End: Complemental strand, 49632984 - 49632936
Alignment:
Q  39 ttttttgacatccattgtttcctagaaaacacatgggaatgaccaaaaac 88  Q
    ||||||||||||||||| || ||||||| ||||||| |||||||||||||    
T  49632984 ttttttgacatccattgatttctagaaa-cacatggaaatgaccaaaaac 49632936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 85; Significance: 2e-40; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 30 - 202
Target Start/End: Complemental strand, 4873218 - 4873047
Alignment:
Q  30 gaggcttgcttttttgacatccattgtttcctagaaaacacatgggaatgaccaaaaacccaacgatagttaactaccgtcggttttctagttataagcc 129  Q
    |||||||| |||||||||||||||| ||||||| ||||||||||  |||||| |||||||||  | |||||||||||| || |||||||||||||||| |    
T  4873218 gaggcttgtttttttgacatccattctttccta-aaaacacatgaaaatgactaaaaacccagtggtagttaactaccatcagttttctagttataagtc 4873120  T
Q  130 cgcgatagttaactaccgctgaagtgtttttgatcattttcatgcgtttctaggaaacaatggttgtcaaaaa 202  Q
     ||| |||||||||||||||||||||||||||||||||| |||| |||| ||| ||| |||||  ||||||||    
T  4873119 agcggtagttaactaccgctgaagtgtttttgatcatttccatgtgtttttagaaaataatggaagtcaaaaa 4873047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 40 - 188
Target Start/End: Original strand, 21538844 - 21538990
Alignment:
Q  40 tttttgacatccattgtttcctagaaaacacatgggaatgaccaaaaacccaacgatagttaactaccgtcggttttctagttataagcccgcgatagtt 139  Q
    ||||||||||||||||||| ||||||| ||||||| ||| |||||||| ||| || || ||||||||| ||| ||||||| ||||||||| ||| || ||    
T  21538844 tttttgacatccattgttttctagaaa-cacatggaaataaccaaaaatccaccg-taattaactaccatcgattttctaattataagccagcggtaatt 21538941  T
Q  140 aactaccgctgaagtgtttttgatcattttcatgcgtttctaggaaaca 188  Q
    |||||||  ||  ||||||||| |||||| | || ||||||||||||||    
T  21538942 aactaccattggggtgtttttggtcatttccttgtgtttctaggaaaca 21538990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 55 - 201
Target Start/End: Complemental strand, 3703725 - 3703579
Alignment:
Q  55 gtttcctagaaaacacatgggaatgaccaaaaacccaa-cgatagttaactaccgtcggttttctagttataagcccgcgatagttaactaccgctgaag 153  Q
    |||||||| ||||||||||| ||||||||||||||| | || ||||||| || |||||||||  | |||||||| |  || ||||||||||||||||| |    
T  3703725 gtttccta-aaaacacatggaaatgaccaaaaaccccagcggtagttaattatcgtcggtttctttgttataagtcaacggtagttaactaccgctgatg 3703627  T
Q  154 tgtttttgatcattttcatgcgtttctaggaaacaatggttgtcaaaa 201  Q
      |||||| ||||||||||| |||||||  ||||||||| ||| ||||    
T  3703626 attttttggtcattttcatgtgtttctaaaaaacaatggatgttaaaa 3703579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 33 - 207
Target Start/End: Original strand, 2605365 - 2605523
Alignment:
Q  33 gcttgcttttttgacatccattgtttcctagaaaacacatgggaatgaccaaaaacccaacgatagttaactaccgtcggttttctagttataagcccgc 132  Q
    ||||||||||||||||| |||||||||||||||| ||||||| |||||||  ||| ||| || ||||||||||| |||| ||||| |||||||||||       
T  2605365 gcttgcttttttgacattcattgtttcctagaaa-cacatgg-aatgacctgaaatccatcggtagttaactac-gtcg-ttttccagttataagcca-- 2605458  T
Q  133 gatagttaactaccgctgaagtgtttttgatcattttcatgcgtttctaggaaacaatggttgtcaaaaagcaat 207  Q
              |||| || || ||||||||||||||| |||| |||||||||||| ||||| ||||||||||||||    
T  2605459 ----------taccactaaaatgtttttgatcatttccatgtgtttctaggaaataatggatgtcaaaaagcaat 2605523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 45 - 208
Target Start/End: Complemental strand, 53860936 - 53860773
Alignment:
Q  45 gacatccattgtttcctagaaaacacatgggaatgaccaaaaacc-caacgatagttaactaccgtcggttttctagttataagcccgcgatagttaact 143  Q
    |||||||||||||||||||||| ||||||| ||||||||||||   ||  | |||||||| ||||  | ||||||||||||||| | ||| | |||||||    
T  53860936 gacatccattgtttcctagaaa-cacatggaaatgaccaaaaaattcagtggtagttaaccaccgctgattttctagttataagtcagcggtggttaact 53860838  T
Q  144 accgctgaagtgtttttgatcattttcatgcgtttctaggaaacaatggttgtca-aaaagcaatt 208  Q
    |||| || | | |||||| |||||| |||| |||||||||||||| ||| ||| | ||||||||||    
T  53860837 accgttggatt-tttttggtcatttccatgtgtttctaggaaacattggatgtgagaaaagcaatt 53860773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 66 - 150
Target Start/End: Original strand, 44307841 - 44307926
Alignment:
Q  66 aacacatgggaatgaccaaaaacc-caacgatagttaactaccgtcggttttctagttataagcccgcgatagttaactaccgctg 150  Q
    ||||||||| ||||||||||||   ||||| ||||||||||||| |||||||||||||| || |  ||| ||||||||||||||||    
T  44307841 aacacatggaaatgaccaaaaaattcaacggtagttaactaccgccggttttctagttaaaatcaggcggtagttaactaccgctg 44307926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 90 - 201
Target Start/End: Original strand, 12328962 - 12329072
Alignment:
Q  90 caacgatagttaactaccgtcggttttctagttataagcccgcgatagttaactaccgctgaagtgtttttgatcattttcatgcgtttctaggaaacaa 189  Q
    ||||| |||||||||| |  |||||||||  ||||||  | | | ||||||||||||||| | | ||||||||||||||||||| |||||||  ||||||    
T  12328962 caacggtagttaactatcaccggttttctgtttataattcagtggtagttaactaccgct-aggagtttttgatcattttcatgtgtttctaaaaaacaa 12329060  T
Q  190 tggttgtcaaaa 201  Q
    ||| ||||||||    
T  12329061 tggatgtcaaaa 12329072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 99 - 146
Target Start/End: Complemental strand, 24680835 - 24680788
Alignment:
Q  99 ttaactaccgtcggttttctagttataagcccgcgatagttaactacc 146  Q
    |||||||||||||||| |||||||||||||| ||| ||||||||||||    
T  24680835 ttaactaccgtcggttctctagttataagccagcggtagttaactacc 24680788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 96 - 191
Target Start/End: Complemental strand, 43136922 - 43136827
Alignment:
Q  96 tagttaactaccgtcggttttctagttataagcccgcgatagttaactaccgctgaagtgtttttgatcattttcatgcgtttctaggaaacaatg 191  Q
    ||||||||||||| || ||||||| ||||||| | ||||||||||||||||||   ||| |||||  |||||| |||| |||| || |||||||||    
T  43136922 tagttaactaccgccgtttttctacttataagtcggcgatagttaactaccgccagagtatttttagtcatttccatgtgtttttaagaaacaatg 43136827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 33 - 127
Target Start/End: Original strand, 54734318 - 54734412
Alignment:
Q  33 gcttgcttttttgacatccattgtttcctagaaaacacatgggaatgaccaaaaacccaac-gatagttaactaccgtcggttttctagttataag 127  Q
    |||||||||||||||||||| ||||| ||| || |||||||| ||||||||||||  | |  | ||||||||||||| | ||||||||||||||||    
T  54734318 gcttgcttttttgacatccaatgttttcta-aacacacatggaaatgaccaaaaaatcgagtggtagttaactaccgccagttttctagttataag 54734412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 91 - 150
Target Start/End: Original strand, 25411625 - 25411685
Alignment:
Q  91 aacgatagttaactaccgtcggtttt-ctagttataagcccgcgatagttaactaccgctg 150  Q
    |||| |||||||||||||| |||||| ||||||||||| | ||| ||||||||||||||||    
T  25411625 aacggtagttaactaccgttggtttttctagttataagtctgcggtagttaactaccgctg 25411685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 150
Target Start/End: Complemental strand, 32430600 - 32430546
Alignment:
Q  96 tagttaactaccgtcggttttctagttataagcccgcgatagttaactaccgctg 150  Q
    ||||||||||||| || ||||||||||||||| | | | ||||||||||||||||    
T  32430600 tagttaactaccgccgattttctagttataagtctgtggtagttaactaccgctg 32430546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 40 - 88
Target Start/End: Complemental strand, 2605518 - 2605471
Alignment:
Q  40 tttttgacatccattgtttcctagaaaacacatgggaatgaccaaaaac 88  Q
    ||||||||||||||| |||||||| |||||||||| ||||| |||||||    
T  2605518 tttttgacatccattatttcctag-aaacacatggaaatgatcaaaaac 2605471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 83 - 127
Target Start/End: Complemental strand, 43770139 - 43770095
Alignment:
Q  83 aaaaacccaacgatagttaactaccgtcggttttctagttataag 127  Q
    |||||||||||| ||||||||| | ||||| ||||||||||||||    
T  43770139 aaaaacccaacggtagttaactgctgtcggatttctagttataag 43770095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 35 - 87
Target Start/End: Original strand, 53860775 - 53860826
Alignment:
Q  35 ttgcttttttgacatccattgtttcctagaaaacacatgggaatgaccaaaaa 87  Q
    |||||||| | ||||||| |||||||||| |||||||||| ||||||||||||    
T  53860775 ttgcttttctcacatccaatgtttcctag-aaacacatggaaatgaccaaaaa 53860826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 35 - 87
Target Start/End: Complemental strand, 54923117 - 54923066
Alignment:
Q  35 ttgcttttttgacatccattgtttcctagaaaacacatgggaatgaccaaaaa 87  Q
    |||||||| | |||||||||||||||||| | |||||||| ||||||||||||    
T  54923117 ttgcttttctcacatccattgtttcctag-agacacatggaaatgaccaaaaa 54923066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 33 - 190
Target Start/End: Complemental strand, 11603 - 11447
Alignment:
Q  33 gcttgcttttttgacatccattgtttcctagaaaacacatgggaatgaccaaaaacccaacgatagttaactaccgtcggttttctagttataagcccgc 132  Q
    ||||||||||||||  ||||||||||| || |||| | |||  |||||||||||||  ||| ||||||||||||||||||||||||||||||||| | ||    
T  11603 gcttgcttttttgatgtccattgtttctta-aaaatatatgaaaatgaccaaaaacttaacaatagttaactaccgtcggttttctagttataagtcggc 11505  T
Q  133 gatagttaactaccgctgaagtgtttttgatcattttcatgcgtttctaggaaacaat 190  Q
      ||||||||||| |||| | |||||||| ||||||||||  ||||||||||||||||    
T  11504 agtagttaactacagctggaatgtttttggtcattttcatatgtttctaggaaacaat 11447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 33 - 190
Target Start/End: Complemental strand, 19340 - 19184
Alignment:
Q  33 gcttgcttttttgacatccattgtttcctagaaaacacatgggaatgaccaaaaacccaacgatagttaactaccgtcggttttctagttataagcccgc 132  Q
    ||||||||||||||  ||||||||||| || |||| | |||  |||||||||||||  ||| ||||||||||||||||||||||||||||||||| | ||    
T  19340 gcttgcttttttgatgtccattgtttctta-aaaatatatgaaaatgaccaaaaacttaacaatagttaactaccgtcggttttctagttataagtcggc 19242  T
Q  133 gatagttaactaccgctgaagtgtttttgatcattttcatgcgtttctaggaaacaat 190  Q
      ||||||||||| |||| | |||||||| ||||||||||  ||||||||||||||||    
T  19241 agtagttaactacagctggaatgtttttggtcattttcatatgtttctaggaaacaat 19184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 63; Significance: 3e-27; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 39 - 161
Target Start/End: Complemental strand, 9041003 - 9040882
Alignment:
Q  39 ttttttgacatccattgtttcctagaaaacacatgggaatgaccaaaaacccaacgatagttaactaccgtcggttttctagttataagcccgcgatagt 138  Q
    ||||||||||| |||||||||||||||| ||||||| |||||| |||||| || || |||||||||| | || |||||||||||||||||  || ||| |    
T  9041003 ttttttgacattcattgtttcctagaaa-cacatggaaatgactaaaaactcagcggtagttaactatcatcagttttctagttataagcatgcaatatt 9040905  T
Q  139 taactaccgctgaagtgtttttg 161  Q
    |||||||||||||||||||||||    
T  9040904 taactaccgctgaagtgtttttg 9040882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 33 - 191
Target Start/End: Complemental strand, 25939462 - 25939302
Alignment:
Q  33 gcttgcttttttgacatccattgtttcctagaaaacacatgggaatgaccaaaaacccaacgatagt---taactaccgtcggttttctagttataagcc 129  Q
    |||||||||||||| ||| |||||||| ||| ||| | |||| | ||||||||| ||||||| ||||   ||||||||  | ||||| ||||||||||||    
T  25939462 gcttgcttttttgagatctattgtttcttaggaaa-agatggaagtgaccaaaatcccaacggtagtagttaactaccaccagttttatagttataagcc 25939364  T
Q  130 cgcgatagttaactaccgctgaagtgtttttgatcattttcatgcgtttctaggaaacaatg 191  Q
     ||| |||||||||||||||   ||||||||| || ||| |||  |||||||||||||||||    
T  25939363 agcggtagttaactaccgcttgtgtgtttttggtcttttccatatgtttctaggaaacaatg 25939302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 39 - 141
Target Start/End: Complemental strand, 4252712 - 4252611
Alignment:
Q  39 ttttttgacatccattgtttcctagaaaacacatgggaatgaccaaaaacccaacgatagttaactaccgtcggttttctagttataagcccgcgatagt 138  Q
    ||||||||| |||| ||||||||| ||| || ||||  ||||  ||||| ||||||| |||||||||||||| |||||||||||||||||  ||| ||||    
T  4252712 ttttttgacttccaatgtttcctataaa-catatggagatgattaaaaaaccaacgacagttaactaccgtcagttttctagttataagctagcggtagt 4252614  T
Q  139 taa 141  Q
    |||    
T  4252613 taa 4252611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 34 - 212
Target Start/End: Complemental strand, 33432228 - 33432048
Alignment:
Q  34 cttgcttttttgacatccattgtttcctagaaaacacatgggaatgaccaaaaacccaacgatagttaactaccgtcggttttctagttataagcccgcg 133  Q
    |||||||||||||| | |||||||||||| ||  ||||| | ||||||||||||  ||  | |||||||| ||| ||  |||||||||||||||   | |    
T  33432228 cttgcttttttgacgttcattgtttccta-aagccacatagaaatgaccaaaaatacagtggtagttaacaaccatcaattttctagttataagtaagtg 33432130  T
Q  134 atagttaactaccgctgaagtgtttttg---atcattttcatgcgtttctaggaaacaatggttgtcaaaaagcaattctca 212  Q
      |||||| ||| ||||| ||||||||    ||||||||||||  ||||||| ||||||| | ||||||||| |||||||||    
T  33432129 gcagttaattactgctgaggtgtttttttttatcattttcatgtatttctagaaaacaatagatgtcaaaaaacaattctca 33432048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 96 - 144
Target Start/End: Original strand, 28798970 - 28799018
Alignment:
Q  96 tagttaactaccgtcggttttctagttataagcccgcgatagttaacta 144  Q
    ||||||||||||| |||||||||||||||||| | ||| ||||||||||    
T  28798970 tagttaactaccgccggttttctagttataagtcagcggtagttaacta 28799018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 133 - 202
Target Start/End: Original strand, 9040936 - 9041002
Alignment:
Q  133 gatagttaactaccgctgaagtgtttttgatcattttcatgcgtttctaggaaacaatggttgtcaaaaa 202  Q
    |||||||||||||||||||   ||||||  |||||| |||| |||||||||||||||||  |||||||||    
T  9040936 gatagttaactaccgctga---gtttttagtcatttccatgtgtttctaggaaacaatgaatgtcaaaaa 9041002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 1e-23; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 90 - 202
Target Start/End: Complemental strand, 37701361 - 37701249
Alignment:
Q  90 caacgatagttaactaccgtcggttttctagttataagcccgcgatagttaactaccgctgaagtgtttttgatcattttcatgcgtttctaggaaacaa 189  Q
    ||||| |||||||||||||||| |||| |||||||||| | ||| |||||||||||  | ||||||||||||||||||| |||  ||||||| |||||||    
T  37701361 caacggtagttaactaccgtcgattttttagttataagtcagcggtagttaactacaaccgaagtgtttttgatcatttccatatgtttctaagaaacaa 37701262  T
Q  190 tggttgtcaaaaa 202  Q
    ||| |||||||||    
T  37701261 tggatgtcaaaaa 37701249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 40 - 181
Target Start/End: Complemental strand, 48073172 - 48073031
Alignment:
Q  40 tttttgacatccattgtttcctagaaaacacatgggaatgaccaa-aaacccaacgatagttaactaccgtcggttttctagttataagcccgcgatagt 138  Q
    ||||||||||||||||||||||| ||||||||||| |||||| || ||| | |||| || |||||||| | | |||||||||||||||||| |  |||||    
T  48073172 tttttgacatccattgtttccta-aaaacacatggaaatgactaataaaacaaacggtaattaactactgccagttttctagttataagccagtaatagt 48073074  T
Q  139 taactaccgctgaagtgtttttgatcattttcatgcgtttcta 181  Q
    |||||| ||||  ||| |||||| |||||| |||| |||||||    
T  48073073 taactatcgctagagtatttttggtcatttccatgtgtttcta 48073031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 35 - 150
Target Start/End: Complemental strand, 5618009 - 5617894
Alignment:
Q  35 ttgcttttttgacatccattgtttcctagaaaacacatgggaatgaccaaaaa-cccaacgatagttaactaccgtcggttttctagttataagcccgcg 133  Q
    |||||||| ||||||  | ||||||||||||| ||||||  || ||| ||||| |||| || ||||||| ||||| |||||||||||||||||||| |||    
T  5618009 ttgcttttctgacattgaatgtttcctagaaa-cacatgaaaaagactaaaaagcccagcggtagttaattaccgccggttttctagttataagccagcg 5617911  T
Q  134 atagttaactaccgctg 150  Q
     ||||||||||||||||    
T  5617910 gtagttaactaccgctg 5617894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 99 - 151
Target Start/End: Complemental strand, 31737038 - 31736986
Alignment:
Q  99 ttaactaccgtcggttttctagttataagcccgcgatagttaactaccgctga 151  Q
    |||||||||  || |||| |||||||||||| |||||||||||||||||||||    
T  31737038 ttaactaccaccgattttttagttataagccagcgatagttaactaccgctga 31736986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 96 - 147
Target Start/End: Complemental strand, 21311808 - 21311757
Alignment:
Q  96 tagttaactaccgtcggttttctagttataagcccgcgatagttaactaccg 147  Q
    ||||||| |||||||  ||||||||||||||||| ||| |||||||||||||    
T  21311808 tagttaattaccgtcaattttctagttataagccagcggtagttaactaccg 21311757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 35 - 126
Target Start/End: Complemental strand, 22555440 - 22555348
Alignment:
Q  35 ttgcttttttgacatccattgtttcctagaaaacacatgggaatgaccaaaaacc--caacgatagttaactaccgtcggttttctagttataa 126  Q
    |||||||||||||| ||| ||||||||| | || |||||| ||||||||||||    || || |||| ||||||| ||||||||||||||||||    
T  22555440 ttgcttttttgacagccaatgtttccta-ataatacatggaaatgaccaaaaaaattcagcggtagtaaactaccttcggttttctagttataa 22555348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 69 - 124
Target Start/End: Original strand, 18951038 - 18951094
Alignment:
Q  69 acatgggaatgacc-aaaaacccaacgatagttaactaccgtcggttttctagttat 124  Q
    |||||| ||||||| |||||||||||||||||||||||||  | ||||| |||||||    
T  18951038 acatggaaatgaccgaaaaacccaacgatagttaactacctccagttttttagttat 18951094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 69 - 173
Target Start/End: Original strand, 22996956 - 22997061
Alignment:
Q  69 acatgggaatgacc-aaaaacccaacgatagttaactaccgtcggttttctagttataagcccgcgatagttaactaccgctgaagtgtttttgatcatt 167  Q
    |||||| ||||||| ||||| |||||  ||||||||||||||||||||||||||||||| |  |   |||||||||||||||||||| |||||| |||||    
T  22996956 acatggaaatgaccgaaaaatccaactgtagttaactaccgtcggttttctagttataaacaagttgtagttaactaccgctgaagtatttttggtcatt 22997055  T
Q  168 ttcatg 173  Q
    ||||||    
T  22997056 ttcatg 22997061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 69 - 173
Target Start/End: Complemental strand, 23791445 - 23791340
Alignment:
Q  69 acatgggaatgacc-aaaaacccaacgatagttaactaccgtcggttttctagttataagcccgcgatagttaactaccgctgaagtgtttttgatcatt 167  Q
    |||||| ||||||| ||||| |||||  ||||||||||||||||||||||||||||||| |  |   |||||||||||||||||||| |||||| |||||    
T  23791445 acatggaaatgaccgaaaaatccaactgtagttaactaccgtcggttttctagttataaacaagttgtagttaactaccgctgaagtatttttggtcatt 23791346  T
Q  168 ttcatg 173  Q
    ||||||    
T  23791345 ttcatg 23791340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 66 - 173
Target Start/End: Original strand, 18142381 - 18142489
Alignment:
Q  66 aacacatgggaatgaccaaaaacccaa-cgatagttaactaccgtcggttttctagttataagcccgcgatagttaactaccgctgaagtgtttttgatc 164  Q
    ||||||||  ||||||||||||  ||| || |||||||||||||| ||||||||||| |||| |  ||| ||||||||||||||||| ||||||||  ||    
T  18142381 aacacatgaaaatgaccaaaaaatcaagcggtagttaactaccgttggttttctagtcataaacaagcgctagttaactaccgctgaggtgtttttagtc 18142480  T
Q  165 attttcatg 173  Q
    |||||||||    
T  18142481 attttcatg 18142489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 33 - 144
Target Start/End: Original strand, 13613743 - 13613853
Alignment:
Q  33 gcttgcttttttgacatccattgtttcctagaaaacacatgggaatgaccaaaaacccaacgatagttaactaccgtcggttttctagttataagcccgc 132  Q
    ||||| ||||| |||||| ||||||| ||||||| ||||||  ||||||||||||  ||| | || ||||||||||||| ||||||||||| ||||| |     
T  13613743 gcttgttttttcgacatctattgttttctagaaa-cacatgaaaatgaccaaaaattcaatggtaattaactaccgtcgattttctagttagaagccagt 13613841  T
Q  133 gatagttaacta 144  Q
    | ||||||||||    
T  13613842 ggtagttaacta 13613853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 76 - 190
Target Start/End: Complemental strand, 30351565 - 30351451
Alignment:
Q  76 aatgaccaaaaacccaacgatagttaactaccgtcggttttctagttataagcccgcgatagttaactaccgctgaagtgtttttgatcattttcatgcg 175  Q
    ||||||||||||  || || |||||| |||  ||||||||||||||||||||   |   ||||||||||||| ||  ||||||||| ||||||||||  |    
T  30351565 aatgaccaaaaattcagcggtagttagctagtgtcggttttctagttataagttagaagtagttaactaccgttggggtgtttttggtcattttcatatg 30351466  T
Q  176 tttctaggaaacaat 190  Q
    |||||||||||||||    
T  30351465 tttctaggaaacaat 30351451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 99 - 191
Target Start/End: Complemental strand, 30015152 - 30015061
Alignment:
Q  99 ttaactaccgtcggttttctagttataagcccgcgatagttaactaccgctgaagtgtttttgatcattttcatgcgtttctaggaaacaatg 191  Q
    ||||||| |||| |||||||  |||||||  |||| |||||||||||||||| || ||||||| | ||||||||| |||| ||||||||||||    
T  30015152 ttaactatcgtcagttttctgtttataagttcgcggtagttaactaccgctgtag-gtttttggtaattttcatgtgtttttaggaaacaatg 30015061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 83 - 150
Target Start/End: Original strand, 12120144 - 12120211
Alignment:
Q  83 aaaaacccaacgatagttaactaccgtcggttttctagttataagcccgcgatagttaactaccgctg 150  Q
    ||||||| | || ||||||||| |  ||||||||||||||||||||  ||| ||||||||||||||||    
T  12120144 aaaaacctagcggtagttaactcctatcggttttctagttataagctagcggtagttaactaccgctg 12120211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 83 - 150
Target Start/End: Original strand, 16185300 - 16185367
Alignment:
Q  83 aaaaacccaacgatagttaactaccgtcggttttctagttataagcccgcgatagttaactaccgctg 150  Q
    ||||| |||||| || |||||||| || | |||||||||||||||||  || ||||||||||||||||    
T  16185300 aaaaaaccaacggtaattaactacggttgattttctagttataagccaacggtagttaactaccgctg 16185367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 35 - 160
Target Start/End: Original strand, 8367019 - 8367143
Alignment:
Q  35 ttgcttttttgacatccattgtttcctagaaaacacatgggaatgaccaaaaacccaacgatagttaactaccgtcggttttctagttataagcccgcga 134  Q
    ||||||||||||||||||||||||||||| |||| ||| | ||||||||||||| || || ||||||||||||  || |||| ||||||| | || | |     
T  8367019 ttgcttttttgacatccattgtttcctag-aaacccatagaaatgaccaaaaactcagcggtagttaactaccaccgattttttagttatcaaccagtgg 8367117  T
Q  135 tagttaactaccgctgaagtgttttt 160  Q
    |||||||||||||||  |||||||||    
T  8367118 tagttaactaccgcttgagtgttttt 8367143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 54 - 192
Target Start/End: Complemental strand, 14613692 - 14613553
Alignment:
Q  54 tgtttcctagaaaacacatgggaatgaccaaaaac--ccaacgatagttaactaccgtcggttttctagttataagcccgcgatagttaactaccgctga 151  Q
    |||||||||||||  ||||||||||| | |||||   ||| || ||||||||||||| || ||||||||||||||||| ||  | | ||||||||| ||     
T  14613692 tgtttcctagaaat-acatgggaatgccaaaaaataaccagcgttagttaactaccgccgattttctagttataagccagcagtggctaactaccgttgg 14613594  T
Q  152 agtgtttttgatcattttcatgcgtttctaggaaacaatgg 192  Q
    |||||||||| | ||||||||| ||||||||||||||||||    
T  14613593 agtgtttttggttattttcatgtgtttctaggaaacaatgg 14613553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 76 - 191
Target Start/End: Complemental strand, 6706393 - 6706278
Alignment:
Q  76 aatgaccaaaaacccaacgatagttaactaccgtcggttttctagttataagcccgcgatagttaactaccgctgaagtgtttttgatcattttcatgcg 175  Q
    |||||| |||||| ||||| ||||||||||| | |  |||| |||||||||| |  || |||||||||||||||||| |||||||| | ||||||||| |    
T  6706393 aatgacaaaaaactcaacggtagttaactactgccaattttttagttataagtcaacggtagttaactaccgctgaaatgtttttggttattttcatgtg 6706294  T
Q  176 tttctaggaaacaatg 191  Q
    ||| || |||||||||    
T  6706293 tttataagaaacaatg 6706278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 33 - 89
Target Start/End: Complemental strand, 10818929 - 10818874
Alignment:
Q  33 gcttgcttttttgacatccattgtttcctagaaaacacatgggaatgaccaaaaacc 89  Q
    |||||||||||||||||||||||||| ||| ||||||||||| ||||||||||||||    
T  10818929 gcttgcttttttgacatccattgttttcta-aaaacacatggaaatgaccaaaaacc 10818874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 83 - 151
Target Start/End: Complemental strand, 30513922 - 30513854
Alignment:
Q  83 aaaaacccaacgatagttaactaccgtcggttttctagttataagcccgcgatagttaactaccgctga 151  Q
    |||| |||| || ||||||||||||||| |||||||||||||||| | ||| ||||||||||| |||||    
T  30513922 aaaagcccagcggtagttaactaccgtcagttttctagttataagtcagcggtagttaactactgctga 30513854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 83 - 151
Target Start/End: Complemental strand, 30554262 - 30554194
Alignment:
Q  83 aaaaacccaacgatagttaactaccgtcggttttctagttataagcccgcgatagttaactaccgctga 151  Q
    |||| |||| || ||||||||||||||| |||||||||||||||| | ||| ||||||||||| |||||    
T  30554262 aaaagcccagcggtagttaactaccgtcagttttctagttataagtcagcggtagttaactactgctga 30554194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 135 - 202
Target Start/End: Complemental strand, 8367088 - 8367024
Alignment:
Q  135 tagttaactaccgctgaagtgtttttgatcattttcatgcgtttctaggaaacaatggttgtcaaaaa 202  Q
    |||||||||||||||||   ||||||| ||||||  ||| |||||||||||||||||| |||||||||    
T  8367088 tagttaactaccgctga---gtttttggtcatttctatgggtttctaggaaacaatggatgtcaaaaa 8367024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 110 - 150
Target Start/End: Complemental strand, 14123081 - 14123041
Alignment:
Q  110 cggttttctagttataagcccgcgatagttaactaccgctg 150  Q
    |||||||||||||||||||| ||| ||||||||||||||||    
T  14123081 cggttttctagttataagccagcggtagttaactaccgctg 14123041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 76 - 150
Target Start/End: Complemental strand, 12076000 - 12075925
Alignment:
Q  76 aatgaccaaaaacccaa-cgatagttaactaccgtcggttttctagttataagcccgcgatagttaactaccgctg 150  Q
    |||||||||||| |||| ||  |||||||| | | |||||||||||||||||| | ||| ||||||||||||||||    
T  12076000 aatgaccaaaaaaccaagcggcagttaactgctgccggttttctagttataagtcagcggtagttaactaccgctg 12075925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 153 - 191
Target Start/End: Original strand, 4639526 - 4639564
Alignment:
Q  153 gtgtttttgatcattttcatgcgtttctaggaaacaatg 191  Q
    ||||||||||||||||||||| ||||||| |||||||||    
T  4639526 gtgtttttgatcattttcatgtgtttctaagaaacaatg 4639564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 154 - 211
Target Start/End: Original strand, 28976712 - 28976770
Alignment:
Q  154 tgtttttgatcattttcatgcgtttctaggaaacaatggttgtca-aaaagcaattctc 211  Q
    ||||||||||||||||||||  |||||| |||||||||| ||| | |||||||||||||    
T  28976712 tgtttttgatcattttcatgtatttctaagaaacaatggatgtgagaaaagcaattctc 28976770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 6e-16; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 113 - 192
Target Start/End: Complemental strand, 26452883 - 26452804
Alignment:
Q  113 ttttctagttataagcccgcgatagttaactaccgctgaagtgtttttgatcattttcatgcgtttctaggaaacaatgg 192  Q
    ||||||||||||||||| ||| ||||||||||  ||||  ||||||||| ||||||||||| |||||||| |||||||||    
T  26452883 ttttctagttataagccagcggtagttaactattgctggggtgtttttggtcattttcatgtgtttctagaaaacaatgg 26452804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 135 - 211
Target Start/End: Original strand, 26452897 - 26452974
Alignment:
Q  135 tagttaactaccgctgaagtgtttttgatcattttcatgcgtttctaggaaacaatggttgt-caaaaagcaattctc 211  Q
    ||||||||||  |||| ||| |||||| ||||||||||| |||||||||||| ||||| ||| |||||| ||||||||    
T  26452897 tagttaactattgctggagtatttttggtcattttcatgtgtttctaggaaataatggatgtccaaaaaacaattctc 26452974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 33 - 148
Target Start/End: Complemental strand, 31070780 - 31070665
Alignment:
Q  33 gcttgcttttttgacatccattgtttcctagaaaacacatgggaatgaccaaaaacc-caacgatagttaactaccgtcggttttctagttataagcccg 131  Q
    ||||||||||||||| |||| | |||||||||||| |||||  |||||  |||||   || || ||||||| |||||||  ||||||||||||||| | |    
T  31070780 gcttgcttttttgacttccaatatttcctagaaaa-acatgaaaatgattaaaaaattcagcggtagttaattaccgtcaattttctagttataagtcgg 31070682  T
Q  132 cgatagttaactaccgc 148  Q
    || ||||||||||||||    
T  31070681 cggtagttaactaccgc 31070665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 113 - 182
Target Start/End: Complemental strand, 32609456 - 32609387
Alignment:
Q  113 ttttctagttataagcccgcgatagttaactaccgctgaagtgtttttgatcattttcatgcgtttctag 182  Q
    ||||||||||||||| | ||| || |||| || | |||||||||||||||| |||| |||| ||||||||    
T  32609456 ttttctagttataagtcagcggtaattaattatcactgaagtgtttttgattatttccatgtgtttctag 32609387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 36 - 201
Target Start/End: Original strand, 41324892 - 41325057
Alignment:
Q  36 tgcttttttgacatccattgtttcctagaaaacacatgggaatgaccaaaaac-ccaacgatagttaactaccgtcggttttctagttataagcccgcga 134  Q
    |||| ||||||||||||||||||| |||||| ||||| | ||| ||||||||  ||| |  ||||||||||||| || ||||||  ||  ||| | | ||    
T  41324892 tgctgttttgacatccattgtttcttagaaa-cacattgaaattaccaaaaagtccagcagtagttaactaccgccgattttctgctttgaagtcagtga 41324990  T
Q  135 tagttaactaccgctgaagtgtttttgatcattttcatgcgtttctaggaaacaatggttgtcaaaa 201  Q
    ||||||||||||  |||| |||||||| | |||| |||| ||||||| |||||||||| ||||||||    
T  41324991 tagttaactaccattgaaatgtttttggttatttccatgtgtttctaagaaacaatggatgtcaaaa 41325057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 33 - 108
Target Start/End: Complemental strand, 22537043 - 22536968
Alignment:
Q  33 gcttgcttttttgacatccattgtttcctagaaaacacatgggaatgacc-aaaaacccaacgatagttaactaccg 108  Q
    ||||||||||||||||||||| ||||||||| ||| |||||| ||||||| |||||| |||| |||||||| |||||    
T  22537043 gcttgcttttttgacatccatcgtttcctag-aaatacatggaaatgaccaaaaaactcaactatagttaaataccg 22536968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 96 - 146
Target Start/End: Complemental strand, 12232392 - 12232342
Alignment:
Q  96 tagttaactaccgtcggttttctagttataagcccgcgatagttaactacc 146  Q
    |||||||||||||||| |||| |||||||||| | ||||||||||||||||    
T  12232392 tagttaactaccgtcgattttttagttataagtcagcgatagttaactacc 12232342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 104 - 178
Target Start/End: Original strand, 37629600 - 37629673
Alignment:
Q  104 taccgtcggttttctagttataagcccgcgatagttaactaccgctgaagtgtttttgatcattttcatgcgttt 178  Q
    |||||||||||||||||||||||| | ||| |||||||||| || |||| |||||||| |||||| |||| ||||    
T  37629600 taccgtcggttttctagttataagtcagcggtagttaactatcgatgaa-tgtttttggtcatttccatgtgttt 37629673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 39 - 127
Target Start/End: Complemental strand, 8842504 - 8842416
Alignment:
Q  39 ttttttgacatccattgtttcctagaaaacacatgggaatgaccaaaaacc-caacgatagttaactaccgtcggttttctagttataag 127  Q
    |||||| || |||| ||||||||||||| ||||||| |||| | ||||| | || || |||||||||||||||||||||||| |||||||    
T  8842504 tttttttacttccaatgtttcctagaaa-cacatggaaatgtctaaaaaactcagcggtagttaactaccgtcggttttctaattataag 8842416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 26 - 106
Target Start/End: Original strand, 13793660 - 13793742
Alignment:
Q  26 ctatgaggcttgcttttttgacatccattgtttcctagaaaacacatgggaatgaccaaaaa---cccaacgatagttaactac 106  Q
    |||||||  ||||| ||||||||||||||||||| ||| ||||| ||| |||||||||||||   ||||||| |||||||||||    
T  13793660 ctatgagtgttgctgttttgacatccattgtttcttag-aaacatatgagaatgaccaaaaacaccccaacggtagttaactac 13793742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 33 - 153
Target Start/End: Original strand, 20897330 - 20897450
Alignment:
Q  33 gcttgcttttttgacatccattgtttcctagaaaacacatgggaatgaccaaaaac-ccaacgatagttaactaccgtcggttttctagttataagcccg 131  Q
    |||| ||||||||||||||| | ||| ||||||| ||||||| ||||| ||||||  ||| |  ||||||| ||| |||||||||||| ||||||| | |    
T  20897330 gctttcttttttgacatccaatattttctagaaa-cacatggaaatgatcaaaaaatccagcagtagttaaatactgtcggttttctaattataagtcag 20897428  T
Q  132 cgatagttaactaccgctgaag 153  Q
    |  ||||| |||||||||||||    
T  20897429 cagtagtttactaccgctgaag 20897450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 83 - 148
Target Start/End: Complemental strand, 25297380 - 25297315
Alignment:
Q  83 aaaaacccaacgatagttaactaccgtcggttttctagttataagcccgcgatagttaactaccgc 148  Q
    ||||| |||||| ||||||||| | ||| |||||||||||||||| | ||| ||||||||||||||    
T  25297380 aaaaaaccaacggtagttaactgctgtcagttttctagttataagtcagcggtagttaactaccgc 25297315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 135 - 201
Target Start/End: Complemental strand, 13793741 - 13793675
Alignment:
Q  135 tagttaactaccgctgaagtgtttttgatcattttcatgcgtttctaggaaacaatggttgtcaaaa 201  Q
    ||||||||||||| ||  ||||||||| ||||| ||||  ||||||| |||||||||| ||||||||    
T  13793741 tagttaactaccgttggggtgtttttggtcattctcatatgtttctaagaaacaatggatgtcaaaa 13793675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 211
Target Start/End: Complemental strand, 9745475 - 9745338
Alignment:
Q  76 aatgaccaaaaacccaacgatagttaactaccgtcggttttctagttataagcccgcgatagttaactaccgctgaag-tgtttttgatcattttcatgc 174  Q
    ||||||||||||| || || ||||||||||||| || |||||    |||||| | ||  |||||||||||||| | || | |||||| |||||| ||       
T  9745475 aatgaccaaaaactcagcggtagttaactaccgccgattttcctaatataagtcagcagtagttaactaccgccggagttttttttggtcatttccacat 9745376  T
Q  175 gtttctaggaaacaatggttgtcaaaa-agcaattctc 211  Q
    ||||||| |||||||||| |||||||| ||||||||||    
T  9745375 gtttctaagaaacaatggatgtcaaaacagcaattctc 9745338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 196
Target Start/End: Complemental strand, 39994503 - 39994443
Alignment:
Q  135 tagttaactaccgctgaagtgtttttgatcattttcatgcgtttctaggaaacaatggttgt 196  Q
    ||||||||||||||| | || |||||||||||||| ||| ||||||||||||| || |||||    
T  39994503 tagttaactaccgct-acgtttttttgatcatttttatgtgtttctaggaaacgattgttgt 39994443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 96 - 144
Target Start/End: Original strand, 4984000 - 4984048
Alignment:
Q  96 tagttaactaccgtcggttttctagttataagcccgcgatagttaacta 144  Q
    |||||||||||||||| |||||||||||||||   ||| ||||||||||    
T  4984000 tagttaactaccgtcgattttctagttataagttagcggtagttaacta 4984048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 36 - 88
Target Start/End: Complemental strand, 41325062 - 41325011
Alignment:
Q  36 tgcttttttgacatccattgtttcctagaaaacacatgggaatgaccaaaaac 88  Q
    |||| ||||||||||||||||||| ||| |||||||||| ||| |||||||||    
T  41325062 tgctattttgacatccattgtttcttag-aaacacatggaaataaccaaaaac 41325011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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