View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4081_low_18 (Length: 351)
Name: NF4081_low_18
Description: NF4081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4081_low_18 |
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Alignment Details
Target: chr2 (Bit Score: 277; Significance: 1e-155; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 19 - 341
Target Start/End: Complemental strand, 40551063 - 40550743
Alignment:
| Q |
19 |
aattgtcctaacacctgaccatgatatagctttgtttagtttggaggttatattgaggctgatggaagtgtcttgaatttattttgtttgctgggctaac |
118 |
Q |
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| T |
40551063 |
aattgtcctaacacctgaccatgatatagctttgtttagtttggaggttatattgaggctgatggaagtgtcttgaatttattttgtttgctgggctaac |
40550964 |
T |
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| Q |
119 |
tgtttgctctaattattgagagtaaaatgcatataggtaatcaagggtagcttcttctttagctcattgatattctgatattcatctaacaaattattat |
218 |
Q |
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| T |
40550963 |
tgtttgctctaattattgagagtaaaatgcatataggtaatcaagggtagcttcttctttagctcattgatattctgatattcatctaacaaattattat |
40550864 |
T |
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| Q |
219 |
taattaacaatatgaggtgacttttgtnnnnnnnnnnngtaatcaaaattctgtctgattttcatcggaactggcttgtgagcttggctattcagtgatc |
318 |
Q |
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| T |
40550863 |
taattaacaatatgaggtgacttttgt--aaaaaaaaagtaatcaaaattctgtctgattttcatcggaactggctcgtgaacttggctattcagtgatc |
40550766 |
T |
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| Q |
319 |
tatattgttatctataccctatg |
341 |
Q |
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||||||||||||||||||||||| |
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| T |
40550765 |
tatattgttatctataccctatg |
40550743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 87 - 225
Target Start/End: Complemental strand, 40568282 - 40568143
Alignment:
| Q |
87 |
tgtcttgaatttattttgtttgctgggctaactgtttgc-tctaattattgagagtaaaatgcatataggtaatcaagggtagcttcttcttt-agctca |
184 |
Q |
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|||||||||||| | || ||| ||||||||||||||||| | |||||||||| ||||||||| |||||||||||||| || |||||| ||||| |||||| |
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| T |
40568282 |
tgtcttgaatttttatt-tttactgggctaactgtttgcatttaattattgatagtaaaatgtatataggtaatcaa-ggcagcttcatctttaagctca |
40568185 |
T |
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| Q |
185 |
ttgatattctgatattcatctaacaaattatt-attaattaa |
225 |
Q |
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||||||||| |||||| ||||| ||||||||| ||||||||| |
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| T |
40568184 |
ttgatattccgatatttatctatcaaattattaattaattaa |
40568143 |
T |
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