View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4081_low_19 (Length: 347)
Name: NF4081_low_19
Description: NF4081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4081_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 19 - 337
Target Start/End: Complemental strand, 35433724 - 35433397
Alignment:
| Q |
19 |
ctccttaagtaagaattcatatttgaattt-gatgataaaagagctctatgtccttaaggacataaacttaaagtgttcaa------atcttttatgata |
111 |
Q |
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| T |
35433724 |
ctccttaagtaagaattcatatttaaattttgatgataaaagagctctatgtccttaaggacataaacttaaagtgttcaacttcaaatcttttatgata |
35433625 |
T |
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| Q |
112 |
atttttggatggatacaaagatttaaacactttatttaaaagttatgctatttgttccgacaaaatacgcttcgaaaatttcacgaatcactttcatccg |
211 |
Q |
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||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| ||| | ||| |
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| T |
35433624 |
atttttggatgaatacgaagatttaaacactttatttaaaagttatgctatttgttccgacaaaacacgcctcgaaaatttcacgaatcaatttgacccg |
35433525 |
T |
|
| Q |
212 |
taggatcttttgctggacttcaatcatggttagtaaaatattaaaagtagggcagggtaataagaaaaatagac--atcatgaatagttcgtgatcaacc |
309 |
Q |
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||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| |
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| T |
35433524 |
taggatcttttgctggactggaatcatggttggtaaaatattaaaagtagggcagggtaataagaaaaatagacatatcatgaataattcgtgatcaacc |
35433425 |
T |
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| Q |
310 |
tggtcgctatagttagtatttccctttg |
337 |
Q |
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|| || |||||||||||||||||||||| |
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| T |
35433424 |
tgatccctatagttagtatttccctttg |
35433397 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 191 - 273
Target Start/End: Complemental strand, 32556219 - 32556137
Alignment:
| Q |
191 |
ttcacgaatcactttcatccgtaggatcttttgctggacttcaatcatggttagtaaaatattaaaagtagggcagggtaata |
273 |
Q |
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||||||||||||| | | ||||| ||| |||||||||||| |||||||| | |||| ||||||||||| ||||||||||||| |
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| T |
32556219 |
ttcacgaatcactgtgagccgtatgattttttgctggactgaaatcatgggtggtaatatattaaaagtggggcagggtaata |
32556137 |
T |
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