View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4081_low_2 (Length: 611)

Name: NF4081_low_2
Description: NF4081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4081_low_2
NF4081_low_2
[»] chr8 (12 HSPs)
chr8 (356-592)||(5688849-5689085)
chr8 (358-502)||(18141421-18141565)
chr8 (358-505)||(40320686-40320833)
chr8 (355-501)||(8149937-8150082)
chr8 (408-524)||(6127700-6127817)
chr8 (396-502)||(9765388-9765493)
chr8 (396-491)||(26402720-26402816)
chr8 (356-415)||(30291216-30291275)
chr8 (28-83)||(19703452-19703507)
chr8 (526-571)||(40320833-40320878)
chr8 (557-592)||(18141600-18141635)
chr8 (28-86)||(11819832-11819890)
[»] chr1 (17 HSPs)
chr1 (355-592)||(28265921-28266158)
chr1 (356-505)||(776847-776994)
chr1 (356-484)||(50167608-50167737)
chr1 (356-484)||(50169630-50169759)
chr1 (467-592)||(45644709-45644834)
chr1 (355-519)||(47255971-47256134)
chr1 (509-592)||(50167542-50167625)
chr1 (414-519)||(40816348-40816452)
chr1 (356-431)||(8871591-8871666)
chr1 (356-430)||(45644824-45644898)
chr1 (404-524)||(47703437-47703557)
chr1 (509-592)||(50169564-50169647)
chr1 (526-584)||(776994-777052)
chr1 (28-86)||(6122850-6122908)
chr1 (32-86)||(44961825-44961879)
chr1 (555-592)||(47255905-47255942)
chr1 (355-391)||(43342772-43342808)
[»] chr6 (4 HSPs)
chr6 (356-592)||(3039268-3039505)
chr6 (104-195)||(13441184-13441271)
chr6 (396-488)||(21800913-21801005)
chr6 (355-388)||(4045012-4045045)
[»] chr3 (12 HSPs)
chr3 (356-502)||(9666891-9667037)
chr3 (357-572)||(31314120-31314330)
chr3 (355-491)||(29196866-29197002)
chr3 (356-505)||(28073999-28074148)
chr3 (356-503)||(44700914-44701062)
chr3 (396-520)||(25796259-25796383)
chr3 (407-524)||(3715495-3715612)
chr3 (526-592)||(28074148-28074214)
chr3 (407-524)||(47650045-47650162)
chr3 (355-386)||(5372821-5372852)
chr3 (31-86)||(52769945-52770000)
chr3 (556-588)||(44700849-44700881)
[»] chr4 (13 HSPs)
chr4 (356-505)||(45687616-45687765)
chr4 (355-491)||(36463836-36463972)
chr4 (355-477)||(52467782-52467904)
chr4 (355-502)||(46147779-46147910)
chr4 (500-589)||(45687553-45687642)
chr4 (396-488)||(3793593-3793686)
chr4 (396-524)||(24334528-24334656)
chr4 (28-86)||(7949416-7949474)
chr4 (31-86)||(47386753-47386808)
chr4 (52-86)||(3606984-3607018)
chr4 (28-86)||(9693460-9693518)
chr4 (555-592)||(36463755-36463792)
chr4 (555-592)||(52467708-52467745)
[»] chr7 (12 HSPs)
chr7 (358-520)||(24526323-24526486)
chr7 (355-477)||(12098247-12098369)
chr7 (356-484)||(8152947-8153080)
chr7 (372-512)||(22269351-22269490)
chr7 (496-592)||(41317801-41317897)
chr7 (356-505)||(41317867-41318034)
chr7 (543-592)||(8153095-8153144)
chr7 (500-592)||(36146776-36146868)
chr7 (407-491)||(29160270-29160353)
chr7 (28-86)||(41519227-41519284)
chr7 (28-86)||(48983695-48983753)
chr7 (28-79)||(42712014-42712065)
[»] chr2 (11 HSPs)
chr2 (355-505)||(36773146-36773297)
chr2 (355-502)||(33162852-33162999)
chr2 (422-568)||(11066957-11067103)
chr2 (396-524)||(42269847-42269976)
chr2 (396-524)||(34681825-34681953)
chr2 (396-524)||(31056521-31056650)
chr2 (526-592)||(36773297-36773363)
chr2 (356-394)||(11066907-11066945)
chr2 (555-592)||(8040453-8040490)
chr2 (509-590)||(26352264-26352345)
chr2 (555-592)||(42269757-42269794)
[»] chr5 (5 HSPs)
chr5 (396-502)||(10282208-10282315)
chr5 (355-486)||(28277694-28277824)
chr5 (396-491)||(3881241-3881337)
chr5 (28-86)||(17028226-17028284)
chr5 (46-86)||(17877122-17877162)
[»] scaffold0477 (2 HSPs)
scaffold0477 (396-524)||(5447-5577)
scaffold0477 (550-592)||(5625-5667)


Alignment Details
Target: chr8 (Bit Score: 161; Significance: 1e-85; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 356 - 592
Target Start/End: Original strand, 5688849 - 5689085
Alignment:
Q  356 tgttgaaatgtgtctcaaaattgatgttgaagtttggaacaatcgtgacacatttgcagggcaacatggcacgattgaatggttcagtttttgggttgcc 455  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||||||||||| |||||||||||||||||||||||||| ||||| |    
T  5688849 tgttgaaatgtgtctcaaaattgatgttgaagtttggaaaaatcgtggcacgtttgcagggcaacgtggcacgattgaatggttcagttttttggttgtc 5688948  T
Q  456 actagaaaaatcgtggcacgatccaggaggaacgtgtcatgatgcaggaggaacgtgtcacgatgcaggggataagagcaagaaatatactgctaccaac 555  Q
    |||  ||||||||||||||||||||||||||||||| || |||||||||| |||||| |||| |||||| ||||||| |||| | | |||||||||||||    
T  5688949 actgaaaaaatcgtggcacgatccaggaggaacgtggcacgatgcaggagcaacgtggcacggtgcaggagataagatcaagtactgtactgctaccaac 5689048  T
Q  556 tccatcgtggcacgatgagctcgaaacgtggcacgat 592  Q
    ||||||||||||||||| |||||||||||||||||||    
T  5689049 tccatcgtggcacgatgggctcgaaacgtggcacgat 5689085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 358 - 502
Target Start/End: Original strand, 18141421 - 18141565
Alignment:
Q  358 ttgaaatgtgtctcaaaattgatgttgaagtttggaacaatcgtgacacatttgcagggcaacatggcacgattgaatggttcagtttttgggttgccac 457  Q
    ||||||||||||||||||||||||||||||| ||||||||||||| ||| ||||||||||||| | ||||||||||| ||||||||||||||||||||||    
T  18141421 ttgaaatgtgtctcaaaattgatgttgaagtctggaacaatcgtggcacgtttgcagggcaacgtcgcacgattgaacggttcagtttttgggttgccac 18141520  T
Q  458 tagaaaaatcgtggcacgatccaggaggaacgtgtcatgatgcag 502  Q
    | |||||||  ||||||||||||||||||||||| || |||||||    
T  18141521 tggaaaaattatggcacgatccaggaggaacgtggcacgatgcag 18141565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 358 - 505
Target Start/End: Original strand, 40320686 - 40320833
Alignment:
Q  358 ttgaaatgtgtctcaaaattgatgttgaagtttggaacaatcgtgacacatttgcagggcaacatggcacgattgaatggttcagtttttgggttgccac 457  Q
    ||||||||||||| |||||||| |||||||||||||| ||||||| ||  ||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  40320686 ttgaaatgtgtcttaaaattgaagttgaagtttggaaaaatcgtggcatgtttgcagggcaacgtggcacgattgaatggttcagtttttgggttgccac 40320785  T
Q  458 tagaaaaatcgtggcacgatccaggaggaacgtgtcatgatgcaggag 505  Q
    | ||||||||||||||| ||  |||||||||||| || ||||||||||    
T  40320786 tggaaaaatcgtggcacaatgtaggaggaacgtggcacgatgcaggag 40320833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 355 - 501
Target Start/End: Complemental strand, 8150082 - 8149937
Alignment:
Q  355 ttgttgaaatgtgtctcaaaattgatgttgaagtttggaacaatcgtgacacatttgcagggcaacatggcacgattgaatggttcagtttttgggttgc 454  Q
    |||||||||  || ||||||||||||| |||||| ||||| ||||||| ||| ||||||||||||  |||||||||||||||||||||||||||||||||    
T  8150082 ttgttgaaaattgactcaaaattgatggtgaagtctggaa-aatcgtggcacgtttgcagggcaatgtggcacgattgaatggttcagtttttgggttgc 8149984  T
Q  455 cactagaaaaatcgtggcacgatccaggaggaacgtgtcatgatgca 501  Q
    |||||||||| ||||||||||||| |||||||| ||| || ||||||    
T  8149983 cactagaaaattcgtggcacgatctaggaggaatgtgacacgatgca 8149937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 408 - 524
Target Start/End: Complemental strand, 6127817 - 6127700
Alignment:
Q  408 tttgcagggcaacatggcacgattgaatggttcagtttttgggtt-gccactagaaaaatcgtggcacgatccaggaggaacgtgtcatgatgcaggagg 506  Q
    ||||||||||||  ||||||||||| ||||||||| ||||||||| | | |||||||||| |||||||||||||  ||||||||| || |||| | ||||    
T  6127817 tttgcagggcaatgtggcacgattggatggttcagattttgggtttgtcgctagaaaaattgtggcacgatccaataggaacgtgacacgatggaagagg 6127718  T
Q  507 aacgtgtcacgatgcagg 524  Q
    |||||| |||||| ||||    
T  6127717 aacgtggcacgatccagg 6127700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 396 - 502
Target Start/End: Original strand, 9765388 - 9765493
Alignment:
Q  396 aatcgtgacacatttgcagggcaacatggcacgattgaatggttcagtttttgggttgccactagaaaaatcgtggcacgatccaggaggaacgtgtcat 495  Q
    ||||||| ||| ||||||||||||| ||||||||||| ||||||||  ||| || ||| |||  |||||||| ||||||||||||||||||||||| ||     
T  9765388 aatcgtggcacgtttgcagggcaacgtggcacgattggatggttcatatttgggtttgtcacg-gaaaaatcatggcacgatccaggaggaacgtggcac 9765486  T
Q  496 gatgcag 502  Q
    |||||||    
T  9765487 gatgcag 9765493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 396 - 491
Target Start/End: Original strand, 26402720 - 26402816
Alignment:
Q  396 aatcgtgacacatttgcagggcaacatggcacgattgaatggttcagtttttgggttgcca-ctagaaaaatcgtggcacgatccaggaggaacgtg 491  Q
    ||||||| ||| ||||||||||||| ||||||||||| ||||||||| |||||||||   | || ||||| |||||||||||| ||||| |||||||    
T  26402720 aatcgtggcacgtttgcagggcaacgtggcacgattggatggttcagattttgggtttatagctggaaaattcgtggcacgattcaggatgaacgtg 26402816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 356 - 415
Target Start/End: Original strand, 30291216 - 30291275
Alignment:
Q  356 tgttgaaatgtgtctcaaaattgatgttgaagtttggaacaatcgtgacacatttgcagg 415  Q
    ||||||||||||||||||||||||||||||||| ||||| ||||||  ||| ||||||||    
T  30291216 tgttgaaatgtgtctcaaaattgatgttgaagtctggaaaaatcgtcgcacgtttgcagg 30291275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 28 - 83
Target Start/End: Complemental strand, 19703507 - 19703452
Alignment:
Q  28 tcaaggtctcaggtgcgcttctcgctagtgtcaagttaggtgggctaatttaactt 83  Q
    |||||||||||||| || ||||| |||||||||| | |||||||||||||||||||    
T  19703507 tcaaggtctcaggttcgattctccctagtgtcaattaaggtgggctaatttaactt 19703452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 526 - 571
Target Start/End: Original strand, 40320833 - 40320878
Alignment:
Q  526 gataagagcaagaaatatactgctaccaactccatcgtggcacgat 571  Q
    |||||||||||| | | |||||||||||||||||||||||||||||    
T  40320833 gataagagcaagtattgtactgctaccaactccatcgtggcacgat 40320878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 557 - 592
Target Start/End: Original strand, 18141600 - 18141635
Alignment:
Q  557 ccatcgtggcacgatgagctcgaaacgtggcacgat 592  Q
    |||||||||||||||| |||||||||||||||||||    
T  18141600 ccatcgtggcacgatgggctcgaaacgtggcacgat 18141635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 28 - 86
Target Start/End: Original strand, 11819832 - 11819890
Alignment:
Q  28 tcaaggtctcaggtgcgcttctcgctagtgtcaagttaggtgggctaatttaacttctt 86  Q
    |||||||||||||| || ||| | |||||||||| || |||||||||||||| ||||||    
T  11819832 tcaaggtctcaggttcgattcactctagtgtcaatttgggtgggctaatttagcttctt 11819890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 142; Significance: 3e-74; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 355 - 592
Target Start/End: Complemental strand, 28266158 - 28265921
Alignment:
Q  355 ttgttgaaatgtgtctcaaaattgatgttgaagtttggaacaatcgtgacacatttgcagggcaacatggcacgattgaatggttcagtttttgggttgc 454  Q
    |||||||||||||||||||||||||||| |||||||| || |||| || ||| ||||||||||||| ||||||||||||||||||||| |||||||||||    
T  28266158 ttgttgaaatgtgtctcaaaattgatgtggaagtttgaaaaaatcatggcacgtttgcagggcaacgtggcacgattgaatggttcagattttgggttgc 28266059  T
Q  455 cactagaaaaatcgtggcacgatccaggaggaacgtgtcatgatgcaggaggaacgtgtcacgatgcaggggataagagcaagaaatatactgctaccaa 554  Q
    |||| ||||||||||||||||||||| ||||||| || || |||||||||| || ||| ||| ||||||| ||||||| |||| | | ||||||||||||    
T  28266058 cactggaaaaatcgtggcacgatccaagaggaacatggcacgatgcaggagcaatgtggcaccatgcaggagataagatcaagtattgtactgctaccaa 28265959  T
Q  555 ctccatcgtggcacgatgagctcgaaacgtggcacgat 592  Q
    |||||||||||||||||| |||| ||||||||||||||    
T  28265958 ctccatcgtggcacgatgggctcaaaacgtggcacgat 28265921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 356 - 505
Target Start/End: Original strand, 776847 - 776994
Alignment:
Q  356 tgttgaaatgtgtctcaaaattgatgttgaagtttggaacaatcgtgacacatttgcagggcaacatggcacgattgaatggttcagtttttgggttgcc 455  Q
    |||||||||||||||||||||||| |||||||||||||| ||||||| ||| |||| |||| ||| |||||||||||||||||||||||||| | |||||    
T  776847 tgttgaaatgtgtctcaaaattgaagttgaagtttggaaaaatcgtggcacgtttgtagggaaac-tggcacgattgaatggttcagttttt-gattgcc 776944  T
Q  456 actagaaaaatcgtggcacgatccaggaggaacgtgtcatgatgcaggag 505  Q
    | |  |||||||||||||||| |||||||||||||| || ||||||||||    
T  776945 attgaaaaaatcgtggcacgacccaggaggaacgtggcacgatgcaggag 776994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 356 - 484
Target Start/End: Complemental strand, 50167737 - 50167608
Alignment:
Q  356 tgttgaaatgtgtctcaaaattgatgttgaagtttggaacaatcgtgacacatttgcagggcaacatggcacgattgaatggttcag-tttttgggttgc 454  Q
    |||||||||||||||||||||| |||||||||||||||| ||||||| ||| ||||||||||||| || ||  |||||||| ||||| ||||||||||||    
T  50167737 tgttgaaatgtgtctcaaaattaatgttgaagtttggaaaaatcgtggcacgtttgcagggcaacgtgacataattgaatgattcagttttttgggttgc 50167638  T
Q  455 cactagaaaaatcgtggcacgatccaggag 484  Q
    |||| |||||||||||||||||| ||||||    
T  50167637 cactggaaaaatcgtggcacgatgcaggag 50167608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 356 - 484
Target Start/End: Complemental strand, 50169759 - 50169630
Alignment:
Q  356 tgttgaaatgtgtctcaaaattgatgttgaagtttggaacaatcgtgacacatttgcagggcaacatggcacgattgaatggttcagt-ttttgggttgc 454  Q
    ||||||||||| ||| ||||||||||||||||||| ||| ||||||| ||| ||||||||||||| || ||||||||||||||||||| |||||||||||    
T  50169759 tgttgaaatgtctcttaaaattgatgttgaagtttagaaaaatcgtggcacgtttgcagggcaacgtgacacgattgaatggttcagttttttgggttgc 50169660  T
Q  455 cactagaaaaatcgtggcacgatccaggag 484  Q
    ||||  ||||||||||||||||| ||||||    
T  50169659 cactgtaaaaatcgtggcacgatgcaggag 50169630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 467 - 592
Target Start/End: Complemental strand, 45644834 - 45644709
Alignment:
Q  467 cgtggcacgatccaggaggaacgtgtcatgatgcaggaggaacgtgtcacgatgcaggggataagagcaagaaatatactgctaccaactccatcgtggc 566  Q
    ||||||||||||||||||||||||| |  |||||||||| |||||| ||||||||||| |||||||| ||| | | ||||||| ||||||||||||| ||    
T  45644834 cgtggcacgatccaggaggaacgtggctcgatgcaggagaaacgtggcacgatgcaggagataagagtaagtactgtactgctgccaactccatcgtagc 45644735  T
Q  567 acgatgagctcgaaacgtggcacgat 592  Q
    |||||| |||||||||||||||||||    
T  45644734 acgatgggctcgaaacgtggcacgat 45644709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 355 - 519
Target Start/End: Complemental strand, 47256134 - 47255971
Alignment:
Q  355 ttgttgaaatgtgtctcaaaattgatgttgaagtttggaacaatcgtgacacatttgcagggcaacatggcacgattgaatggttcagtttttgggttgc 454  Q
    |||||||||  || ||||||||||||| |||||| ||||| ||||||| ||| ||||||| ||||| ||||||||||| |||||||||  |||| ||||     
T  47256134 ttgttgaaaattgactcaaaattgatggtgaagtctggaaaaatcgtggcacgtttgcagtgcaacgtggcacgattggatggttcag-gtttgagttgt 47256036  T
Q  455 cactagaaaaatcgtggcacgatccaggaggaacgtgtcatgatgcaggaggaacgtgtcacgat 519  Q
    |||| ||||||||||||||||||| |||||||  ||| || ||| ||||||||||||| ||||||    
T  47256035 cactggaaaaatcgtggcacgatctaggaggagtgtggcacgattcaggaggaacgtgacacgat 47255971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 509 - 592
Target Start/End: Complemental strand, 50167625 - 50167542
Alignment:
Q  509 cgtgtcacgatgcaggggataagagcaagaaatatactgctaccaactccatcgtggcacgatgagctcgaaacgtggcacgat 592  Q
    |||| ||||||||||| |||||||  ||| | |||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  50167625 cgtggcacgatgcaggagataagattaagtactatactgctaccaactccatcgtggcacgatgggctcgaaacgtggcacgat 50167542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 414 - 519
Target Start/End: Original strand, 40816348 - 40816452
Alignment:
Q  414 gggcaacatggcacgattgaatggttcagtttttgggttgccactagaaaaatcgtggcacgatccaggaggaacgtgtcatgatgcaggaggaacgtgt 513  Q
    ||||||||||| ||||||| ||||||||| ||| || ||| || | |||||||||||||||||||||||||||||||| || |||||||||||||| ||     
T  40816348 gggcaacatggtacgattggatggttcaggttt-ggtttgtcattggaaaaatcgtggcacgatccaggaggaacgtggcacgatgcaggaggaacatga 40816446  T
Q  514 cacgat 519  Q
    ||||||    
T  40816447 cacgat 40816452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 356 - 431
Target Start/End: Complemental strand, 8871666 - 8871591
Alignment:
Q  356 tgttgaaatgtgtctcaaaattgatgttgaagtttggaacaatcgtgacacatttgcagggcaacatggcacgatt 431  Q
    ||||||||||||||||||||||||||||||||| ||||| ||||||| ||| ||||||||||||| || |||||||    
T  8871666 tgttgaaatgtgtctcaaaattgatgttgaagtctggaaaaatcgtggcacgtttgcagggcaacgtgacacgatt 8871591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 356 - 430
Target Start/End: Complemental strand, 45644898 - 45644824
Alignment:
Q  356 tgttgaaatgtgtctcaaaattgatgttgaagtttggaacaatcgtgacacatttgcagggcaacatggcacgat 430  Q
    |||||||||||||||||||||||| |||||||  ||||| ||||||| ||| ||||||||||||| |||||||||    
T  45644898 tgttgaaatgtgtctcaaaattgaagttgaagcctggaaaaatcgtggcacgtttgcagggcaacgtggcacgat 45644824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 404 - 524
Target Start/End: Original strand, 47703437 - 47703557
Alignment:
Q  404 cacatttgcagggcaacatggcacgattgaatggttcagtttttgggttgccactagaaaaatcgtggcacgatccaggaggaacgtgtcatgatgcagg 503  Q
    ||||||||||||||||| ||||||||||| ||||||||  ||| || ||| | || ||||| |||| ||||||||||| ||||||||| || |||| | |    
T  47703437 cacatttgcagggcaacgtggcacgattggatggttcaaatttgggtttgtcgctggaaaattcgtagcacgatccagaaggaacgtggcacgatggaag 47703536  T
Q  504 aggaacgtgtcacgatgcagg 524  Q
    | ||| |||||||||| ||||    
T  47703537 atgaatgtgtcacgatccagg 47703557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 509 - 592
Target Start/End: Complemental strand, 50169647 - 50169564
Alignment:
Q  509 cgtgtcacgatgcaggggataagagcaagaaatatactgctaccaactccatcgtggcacgatgagctcgaaacgtggcacgat 592  Q
    |||| ||||||||||| ||||||| |||| | | ||||||||| | |||||||||||||||||| |||| ||||||||||||||    
T  50169647 cgtggcacgatgcaggagataagatcaagtattgtactgctacaacctccatcgtggcacgatgggctcaaaacgtggcacgat 50169564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 526 - 584
Target Start/End: Original strand, 776994 - 777052
Alignment:
Q  526 gataagagcaagaaatatactgctaccaactccatcgtggcacgatgagctcgaaacgt 584  Q
    ||||||| |||| | | |||||||||||||||||||||||||||||| |||||||||||    
T  776994 gataagatcaagtattgtactgctaccaactccatcgtggcacgatgggctcgaaacgt 777052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 28 - 86
Target Start/End: Original strand, 6122850 - 6122908
Alignment:
Q  28 tcaaggtctcaggtgcgcttctcgctagtgtcaagttaggtgggctaatttaacttctt 86  Q
    |||||||||||||| || ||| | |||||||||| || |||||||||||||| ||||||    
T  6122850 tcaaggtctcaggttcgattccctctagtgtcaatttgggtgggctaatttagcttctt 6122908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 32 - 86
Target Start/End: Original strand, 44961825 - 44961879
Alignment:
Q  32 ggtctcaggtgcgcttctcgctagtgtcaagttaggtgggctaatttaacttctt 86  Q
    |||||||||| || ||||| |||||||||| || |||||||||||||| ||||||    
T  44961825 ggtctcaggttcgattctctctagtgtcaatttgggtgggctaatttagcttctt 44961879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 555 - 592
Target Start/End: Complemental strand, 47255942 - 47255905
Alignment:
Q  555 ctccatcgtggcacgatgagctcgaaacgtggcacgat 592  Q
    ||||| |||||||||||| |||||||||||||||||||    
T  47255942 ctccaacgtggcacgatgggctcgaaacgtggcacgat 47255905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 355 - 391
Target Start/End: Complemental strand, 43342808 - 43342772
Alignment:
Q  355 ttgttgaaatgtgtctcaaaattgatgttgaagtttg 391  Q
    |||||||||| |||| |||||||||||||||||||||    
T  43342808 ttgttgaaatttgtcccaaaattgatgttgaagtttg 43342772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 134; Significance: 2e-69; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 356 - 592
Target Start/End: Complemental strand, 3039505 - 3039268
Alignment:
Q  356 tgttgaaatgtgtctcaaaattgatgttgaagtttggaacaatcgtgacacatttgcagggcaacatggcacgattgaatggttcagtttttgggtt-gc 454  Q
    |||||||||||||||||||||| |||||||||||||| | ||||||| ||| ||||||||||||| ||||||||||| ||||||||| ||||||||| |     
T  3039505 tgttgaaatgtgtctcaaaatttatgttgaagtttgggaaaatcgtggcacgtttgcagggcaacgtggcacgattggatggttcagattttgggtttgt 3039406  T
Q  455 cactagaaaaatcgtggcacgatccaggaggaacgtgtcatgatgcaggaggaacgtgtcacgatgcaggggataagagcaagaaatatactgctaccaa 554  Q
    | || ||||||||||||||  |||||||||||||||| || |||| |||||||||||| ||||||||||| |||||||||||| | | || |||||||||    
T  3039405 cgctggaaaaatcgtggcaaaatccaggaggaacgtggcacgatggaggaggaacgtggcacgatgcaggagataagagcaagtattgtattgctaccaa 3039306  T
Q  555 ctccatcgtggcacgatgagctcgaaacgtggcacgat 592  Q
    |||||||||||||||||| || ||||||||||||||||    
T  3039305 ctccatcgtggcacgatgggcacgaaacgtggcacgat 3039268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 104 - 195
Target Start/End: Original strand, 13441184 - 13441271
Alignment:
Q  104 attggcttcagtgacctatacagtggaagggctgcatttggagatccctctataaggttttgaaaaataggtgagataaatatgtgtctgag 195  Q
    |||||||||| ||||||||| | ||||||||||||||||||||||||||||    ||||||||||||||||||| |||||||| ||||||||    
T  13441184 attggcttcactgacctatataatggaagggctgcatttggagatccctct----ggttttgaaaaataggtgatataaatatttgtctgag 13441271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 396 - 488
Target Start/End: Original strand, 21800913 - 21801005
Alignment:
Q  396 aatcgtgacacatttgcagggcaacatggcacgattgaatggttcagtttttgggttgccactagaaaaatcgtggcacgatccaggaggaac 488  Q
    ||||||| ||| ||||||||||||| ||| ||||||| ||||||||| ||| || ||| |||| ||||||||||||||||||||| |||||||    
T  21800913 aatcgtggcacgtttgcagggcaacgtggtacgattggatggttcaggtttgggtttgtcactggaaaaatcgtggcacgatccaagaggaac 21801005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 355 - 388
Target Start/End: Original strand, 4045012 - 4045045
Alignment:
Q  355 ttgttgaaatgtgtctcaaaattgatgttgaagt 388  Q
    ||||||||||||||||||||||||||||||||||    
T  4045012 ttgttgaaatgtgtctcaaaattgatgttgaagt 4045045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 115; Significance: 4e-58; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 356 - 502
Target Start/End: Complemental strand, 9667037 - 9666891
Alignment:
Q  356 tgttgaaatgtgtctcaaaattgatgttgaagtttggaacaatcgtgacacatttgcagggcaacatggcacgattgaatggttcagtttttgggttgcc 455  Q
    |||||||||||||||||||||| |||||||||||||||||||||||| ||| ||||||||||||| ||||||||||||| ||||||||||||||||||||    
T  9667037 tgttgaaatgtgtctcaaaattaatgttgaagtttggaacaatcgtggcacgtttgcagggcaacgtggcacgattgaagggttcagtttttgggttgcc 9666938  T
Q  456 actagaaaaatcgtggcacgatccaggaggaacgtgtcatgatgcag 502  Q
    ||| |||||||||||||||||||||||||||||||| || |||||||    
T  9666937 actggaaaaatcgtggcacgatccaggaggaacgtggcacgatgcag 9666891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 357 - 572
Target Start/End: Original strand, 31314120 - 31314330
Alignment:
Q  357 gttgaaatgtgtctcaaaattgatgttgaagtttggaacaatcgtgacacatttgcagggcaacatggcacgattgaatggttcagtttttgggttgcca 456  Q
    ||||||||||||||||||||||||||||||||||| || ||||||| ||| ||||||||| ||   | ||||||     |||||||||||||||| ||||    
T  31314120 gttgaaatgtgtctcaaaattgatgttgaagtttgaaaaaatcgtggcacgtttgcagggtaatgcgacacgat-----ggttcagtttttgggtcgcca 31314214  T
Q  457 ctagaaaaatcgtggcacgatccaggaggaacgtgtcatgatgcaggaggaacgtgtcacgatgcaggggataagagcaagaaatatactgctaccaact 556  Q
    || ||||||||||||||||||||| |||||||||| || ||||||||||||||||| ||||||||||| ||||||| |||| | | ||||||||||||||    
T  31314215 ctggaaaaatcgtggcacgatccaagaggaacgtggcacgatgcaggaggaacgtggcacgatgcaggagataagatcaagtattgtactgctaccaact 31314314  T
Q  557 ccatcgtggcacgatg 572  Q
    ||||| ||||||||||    
T  31314315 ccatcatggcacgatg 31314330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 355 - 491
Target Start/End: Complemental strand, 29197002 - 29196866
Alignment:
Q  355 ttgttgaaatgtgtctcaaaattgatgttgaagtttggaacaatcgtgacacatttgcagggcaacatggcacgattgaatggttcagtttttgggttgc 454  Q
    |||||||||||||||||||||||||||||||||||||| | ||||||| ||| ||||||||||||| |||||||||||||||||||| ||||||||||||    
T  29197002 ttgttgaaatgtgtctcaaaattgatgttgaagtttgggaaaatcgtggcacgtttgcagggcaacgtggcacgattgaatggttcaatttttgggttgc 29196903  T
Q  455 cactagaaaaatcgtggcacgatccaggaggaacgtg 491  Q
    |||| ||||||||||||||||||||||||||||||||    
T  29196902 cactggaaaaatcgtggcacgatccaggaggaacgtg 29196866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 356 - 505
Target Start/End: Original strand, 28073999 - 28074148
Alignment:
Q  356 tgttgaaatgtgtctcaaaattgatgttgaagtttggaacaatcgtgacacatttgcagggcaacatggcacgattgaatggttcagtttttgggttgcc 455  Q
    ||||||||  || |||||||||||||||||||||| ||| ||| ||| ||| ||||||||||||| ||||||||||||||||||||||||||||||||||    
T  28073999 tgttgaaaattgactcaaaattgatgttgaagtttagaaaaattgtggcacgtttgcagggcaacgtggcacgattgaatggttcagtttttgggttgcc 28074098  T
Q  456 actagaaaaatcgtggcacgatccaggaggaacgtgtcatgatgcaggag 505  Q
    ||| |||||||||||||||||||||||||||||||| || ||||||||||    
T  28074099 actggaaaaatcgtggcacgatccaggaggaacgtggcacgatgcaggag 28074148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 356 - 503
Target Start/End: Complemental strand, 44701062 - 44700914
Alignment:
Q  356 tgttgaaatgtgtctcaaaattgatgttgaagtttggaacaatc-gtgacacatttgcagggcaacatggcacgattgaatggttcagtttttgggttgc 454  Q
    ||||||||||||||||||||||||| ||||||| ||||| || | ||| ||| ||||||||||||| ||||||||||||||||||||||||||||||| |    
T  44701062 tgttgaaatgtgtctcaaaattgattttgaagtctggaaaaaaccgtggcacgtttgcagggcaacgtggcacgattgaatggttcagtttttgggttac 44700963  T
Q  455 cactagaaaaatcgtggcacgatccaggaggaacgtgtcatgatgcagg 503  Q
    |||| |||||||||||||||||||||||||||||||  || ||||||||    
T  44700962 cactggaaaaatcgtggcacgatccaggaggaacgtagcacgatgcagg 44700914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 396 - 520
Target Start/End: Complemental strand, 25796383 - 25796259
Alignment:
Q  396 aatcgtgacacatttgcagggcaacatggcacgattgaatggttcagtttttgggttgccactagaaaaatcgtggcacgatccaggaggaacgtgtcat 495  Q
    ||||||| ||| ||||||||||||| ||||||||||| ||| ||||| |||||| ||| |||| ||||||||||| |||||||||||||||||||| ||     
T  25796383 aatcgtggcacgtttgcagggcaacgtggcacgattggatgattcaggttttggtttgtcactggaaaaatcgtgacacgatccaggaggaacgtggcac 25796284  T
Q  496 gatgcaggaggaacgtgtcacgatg 520  Q
    |||| | |||||| ||| |||||||    
T  25796283 gatggaagaggaatgtggcacgatg 25796259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 407 - 524
Target Start/End: Original strand, 3715495 - 3715612
Alignment:
Q  407 atttgcagggcaacatggcacgattgaatggttcagtttttgggttgccactagaaaaatcgtggcacgatccaggaggaacgtgtcatgatgcaggagg 506  Q
    |||||||||||||| |||||||||||  |||||||| |||  | ||| | || ||||||| |||||||||||||||||||||||| ||||||| | || |    
T  3715495 atttgcagggcaacgtggcacgattggttggttcagatttgtgtttgtcgctggaaaaattgtggcacgatccaggaggaacgtgacatgatggaagatg 3715594  T
Q  507 aacgtgtcacgatgcagg 524  Q
    |||||| |||||| ||||    
T  3715595 aacgtggcacgatccagg 3715612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 526 - 592
Target Start/End: Original strand, 28074148 - 28074214
Alignment:
Q  526 gataagagcaagaaatatactgctaccaactccatcgtggcacgatgagctcgaaacgtggcacgat 592  Q
    ||||||| |||| | | |||||||||||||||||||||||||||||| |||||||||||||||||||    
T  28074148 gataagatcaagtattgtactgctaccaactccatcgtggcacgatgggctcgaaacgtggcacgat 28074214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 407 - 524
Target Start/End: Complemental strand, 47650162 - 47650045
Alignment:
Q  407 atttgcagggcaacatggcacgattgaatggttcagtttttgggttgccactagaaaaatcgtggcacgatccaggaggaacgtgtcatgatgcaggagg 506  Q
    |||||||||||||| |||||||||||  |||||||| ||| || ||| |  | |||||||  ||||||||||||||||||||||| ||  ||| | || |    
T  47650162 atttgcagggcaacgtggcacgattggttggttcagatttgggtttgtcgttggaaaaattatggcacgatccaggaggaacgtggcacaatggaagatg 47650063  T
Q  507 aacgtgtcacgatgcagg 524  Q
    |||||| |||||| ||||    
T  47650062 aacgtggcacgatccagg 47650045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 355 - 386
Target Start/End: Original strand, 5372821 - 5372852
Alignment:
Q  355 ttgttgaaatgtgtctcaaaattgatgttgaa 386  Q
    ||||||||||||||||||||||||||||||||    
T  5372821 ttgttgaaatgtgtctcaaaattgatgttgaa 5372852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 31 - 86
Target Start/End: Complemental strand, 52770000 - 52769945
Alignment:
Q  31 aggtctcaggtgcgcttctcgctagtgtcaagttaggtgggctaatttaacttctt 86  Q
    ||||||||||| || |||||  ||||||||| ||||||||||||||||| ||||||    
T  52770000 aggtctcaggttcgattctctttagtgtcaatttaggtgggctaatttagcttctt 52769945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 556 - 588
Target Start/End: Complemental strand, 44700881 - 44700849
Alignment:
Q  556 tccatcgtggcacgatgagctcgaaacgtggca 588  Q
    ||||||||||||||||| |||||||||||||||    
T  44700881 tccatcgtggcacgatgggctcgaaacgtggca 44700849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 114; Significance: 2e-57; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 356 - 505
Target Start/End: Complemental strand, 45687765 - 45687616
Alignment:
Q  356 tgttgaaatgtgtctcaaaattgatgttgaagtttggaacaatcgtgacacatttgcagggcaacatggcacgattgaatggttcagtttttgggttgcc 455  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||||||||||| ||| ||||||||||||||||||||||||||||||    
T  45687765 tgttgaaatgtgtctcaaaattgatgttgaagtttggaaaaatcgtggcacgtttgcagggcaacgtggtacgattgaatggttcagtttttgggttgcc 45687666  T
Q  456 actagaaaaatcgtggcacgatccaggaggaacgtgtcatgatgcaggag 505  Q
    ||| ||||| |||||||||||||||||||||||||| || ||||||||||    
T  45687665 actggaaaagtcgtggcacgatccaggaggaacgtgacacgatgcaggag 45687616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 355 - 491
Target Start/End: Complemental strand, 36463972 - 36463836
Alignment:
Q  355 ttgttgaaatgtgtctcaaaattgatgttgaagtttggaacaatcgtgacacatttgcagggcaacatggcacgattgaatggttcagtttttgggttgc 454  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||| ||| ||||||||||||| || ||||||||||||||||||||||||||||||    
T  36463972 ttgttgaaatgtgtctcaaaattgatattgaagtttggaacaatcgtggcacgtttgcagggcaacgtgacacgattgaatggttcagtttttgggttgc 36463873  T
Q  455 cactagaaaaatcgtggcacgatccaggaggaacgtg 491  Q
    || |  ||||||||||||||||| |||||||||||||    
T  36463872 cattgaaaaaatcgtggcacgatgcaggaggaacgtg 36463836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 355 - 477
Target Start/End: Complemental strand, 52467904 - 52467782
Alignment:
Q  355 ttgttgaaatgtgtctcaaaattgatgttgaagtttggaacaatcgtgacacatttgcagggcaacatggcacgattgaatggttcagtttttgggttgc 454  Q
    |||||||||||||||||||||||||||||||||| |  |||||||||| ||| ||||||||||||| ||||||||||||||||||||| |||||||||||    
T  52467904 ttgttgaaatgtgtctcaaaattgatgttgaagtctaaaacaatcgtggcacgtttgcagggcaacgtggcacgattgaatggttcaggttttgggttgc 52467805  T
Q  455 cactagaaaaatcgtggcacgat 477  Q
    || |  |||||||| ||||||||    
T  52467804 cattgaaaaaatcgaggcacgat 52467782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 355 - 502
Target Start/End: Complemental strand, 46147910 - 46147779
Alignment:
Q  355 ttgttgaaatgtgtctcaaaattgatgttgaagtttggaacaatcgtgacacatttgcagggcaacatggcacgattgaatggttcagtttttgggttgc 454  Q
    |||||||||||||||||||||||||||||||||||||||| |||| || ||| |||                |||||||||||||||| ||| || |||     
T  46147910 ttgttgaaatgtgtctcaaaattgatgttgaagtttggaaaaatcatggcacgttt----------------cgattgaatggttcaggtttgggtttgt 46147827  T
Q  455 cactagaaaaatcgtggcacgatccaggaggaacgtgtcatgatgcag 502  Q
    |||| |||||||||||||||||||||||||||||||| || |||||||    
T  46147826 cactggaaaaatcgtggcacgatccaggaggaacgtggcacgatgcag 46147779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 500 - 589
Target Start/End: Complemental strand, 45687642 - 45687553
Alignment:
Q  500 caggaggaacgtgtcacgatgcaggggataagagcaagaaatatactgctaccaactccatcgtggcacgatgagctcgaaacgtggcac 589  Q
    ||||||||||||| ||||||||||| |||||||  ||| | | |||| |||||||||||||||||  |||||| ||||||||||||||||    
T  45687642 caggaggaacgtgacacgatgcaggagataagataaagtattgtactactaccaactccatcgtgctacgatgggctcgaaacgtggcac 45687553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 396 - 488
Target Start/End: Original strand, 3793593 - 3793686
Alignment:
Q  396 aatcgtgacacatttgcagggcaacatggcacgattgaatggttcagtttttgggttgc-cactagaaaaatcgtggcacgatccaggaggaac 488  Q
    ||||||| ||| ||||||||| ||||||| ||||||| ||||||||| | |||||||   | || |||||||||||||||||||||||||||||    
T  3793593 aatcgtggcacgtttgcagggaaacatggtacgattggatggttcagatattgggtttttcgctggaaaaatcgtggcacgatccaggaggaac 3793686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 396 - 524
Target Start/End: Complemental strand, 24334656 - 24334528
Alignment:
Q  396 aatcgtgacacatttgcagggcaacatggcacgattgaatggttcagtttttgggttgccactagaaaaatcgtggcacgatccaggaggaacgtgtcat 495  Q
    ||||||| ||| ||||||||||||| || |||||||| ||||||||| ||| |  ||| |  | ||||| | |||||||||||||| ||||||||| ||     
T  24334656 aatcgtggcacgtttgcagggcaacgtgtcacgattggatggttcagatttggatttgtcgttggaaaatttgtggcacgatccagaaggaacgtggcac 24334557  T
Q  496 gatgcaggaggaacgtgtcacgatgcagg 524  Q
    |||| | || ||||||| |||||| ||||    
T  24334556 gatggaagatgaacgtggcacgatccagg 24334528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 28 - 86
Target Start/End: Complemental strand, 7949474 - 7949416
Alignment:
Q  28 tcaaggtctcaggtgcgcttctcgctagtgtcaagttaggtgggctaatttaacttctt 86  Q
    |||||||||||||| || ||||| || ||||||| ||||||||||||||||| ||||||    
T  7949474 tcaaggtctcaggttcgattctctctggtgtcaatttaggtgggctaatttagcttctt 7949416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 31 - 86
Target Start/End: Complemental strand, 47386808 - 47386753
Alignment:
Q  31 aggtctcaggtgcgcttctcgctagtgtcaagttaggtgggctaatttaacttctt 86  Q
    ||||||||||| |  ||||| |||||||||| ||||||||||||||||| ||||||    
T  47386808 aggtctcaggttcaattctctctagtgtcaatttaggtgggctaatttagcttctt 47386753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 52 - 86
Target Start/End: Complemental strand, 3607018 - 3606984
Alignment:
Q  52 ctagtgtcaagttaggtgggctaatttaacttctt 86  Q
    |||||||||| ||||||||||||||||||||||||    
T  3607018 ctagtgtcaatttaggtgggctaatttaacttctt 3606984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 28 - 86
Target Start/End: Complemental strand, 9693518 - 9693460
Alignment:
Q  28 tcaaggtctcaggtgcgcttctcgctagtgtcaagttaggtgggctaatttaacttctt 86  Q
    |||||||||||||| || ||| | |||||||||| || |||||||||||||| ||||||    
T  9693518 tcaaggtctcaggttcgattccctctagtgtcaatttgggtgggctaatttaccttctt 9693460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 555 - 592
Target Start/End: Complemental strand, 36463792 - 36463755
Alignment:
Q  555 ctccatcgtggcacgatgagctcgaaacgtggcacgat 592  Q
    ||||||||||||| |||||| |||||||||||||||||    
T  36463792 ctccatcgtggcatgatgagttcgaaacgtggcacgat 36463755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 555 - 592
Target Start/End: Complemental strand, 52467745 - 52467708
Alignment:
Q  555 ctccatcgtggcacgatgagctcgaaacgtggcacgat 592  Q
    |||||||||||||||||| |||||||| ||||||||||    
T  52467745 ctccatcgtggcacgatgggctcgaaatgtggcacgat 52467708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 104; Significance: 2e-51; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 358 - 520
Target Start/End: Complemental strand, 24526486 - 24526323
Alignment:
Q  358 ttgaaatgtgtctcaaaattgatgttgaagtttggaacaatcgtgacacatttgcagggcaacatggcacgattgaatggttcagtttttggg-ttgcca 456  Q
    |||||||||||||||||||||| |||||||||||||| ||||||| ||| ||||||||||||| ||||||||||| ||||||||| ||||||| ||| ||    
T  24526486 ttgaaatgtgtctcaaaattgaagttgaagtttggaaaaatcgtggcacgtttgcagggcaacgtggcacgattggatggttcaggttttgggtttgtca 24526387  T
Q  457 ctagaaaaatcgtggcacgatccaggaggaacgtgtcatgatgcaggaggaacgtgtcacgatg 520  Q
    || |||||||||||||||||||||||||||||||| ||||||| | |||||||||| |||||||    
T  24526386 ctggaaaaatcgtggcacgatccaggaggaacgtggcatgatggaagaggaacgtggcacgatg 24526323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 355 - 477
Target Start/End: Complemental strand, 12098369 - 12098247
Alignment:
Q  355 ttgttgaaatgtgtctcaaaattgatgttgaagtttggaacaatcgtgacacatttgcagggcaacatggcacgattgaatggttcagtttttgggttgc 454  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||||||||||| || ||||||||||||||||||||||||| ||||    
T  12098369 ttgttgaaatgtgtctcaaaattgatgttgaagtttggaaaaatcgtggcacgtttgcagggcaacgtgacacgattgaatggttcagtttttggattgc 12098270  T
Q  455 cactagaaaaatcgtggcacgat 477  Q
    |||| ||||||||||||||||||    
T  12098269 cactggaaaaatcgtggcacgat 12098247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 356 - 484
Target Start/End: Original strand, 8152947 - 8153080
Alignment:
Q  356 tgttgaaatgtgtctcaaaattgat-----gttgaagtttggaacaatcgtgacacatttgcagggcaacatggcacgattgaatggttcagtttttggg 450  Q
    |||||||||||||||||||||||||     |||||||||||||| | ||||| ||| ||||||||||||||||||| |||||||||||||| ||||||||    
T  8152947 tgttgaaatgtgtctcaaaattgatgtgatgttgaagtttggaaaactcgtggcacgtttgcagggcaacatggcaggattgaatggttcaatttttggg 8153046  T
Q  451 ttgccactagaaaaatcgtggcacgatccaggag 484  Q
    ||| |||| ||||||| |||||||||| ||||||    
T  8153047 ttgacactggaaaaattgtggcacgatgcaggag 8153080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 372 - 512
Target Start/End: Original strand, 22269351 - 22269490
Alignment:
Q  372 aaaattgatgttgaagtttggaacaatcgtgacacatttgcagggcaacatggcacgattgaatggttcagtttttgggttgccactagaaaaatcgtgg 471  Q
    |||||||||| |||||| ||||| ||||||| ||| ||||||||||||| ||||||||||  ||||||||  ||| |||||| |||| ||||||||||||    
T  22269351 aaaattgatggtgaagtctggaaaaatcgtggcacgtttgcagggcaacgtggcacgatttgatggttcaagttt-gggttgtcactggaaaaatcgtgg 22269449  T
Q  472 cacgatccaggaggaacgtgtcatgatgcaggaggaacgtg 512  Q
    ||||||||||||||| | || || ||| |||||||||||||    
T  22269450 cacgatccaggaggagcatgacacgattcaggaggaacgtg 22269490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 496 - 592
Target Start/End: Complemental strand, 41317897 - 41317801
Alignment:
Q  496 gatgcaggaggaacgtgtcacgatgcaggggataagagcaagaaatatactgctaccaactccatcgtggcacgatgagctcgaaacgtggcacgat 592  Q
    ||||||||||  ||||| ||||||||||| |||||||||||| | | ||||||||||||||||||||||||| |||| |||||||||||||||||||    
T  41317897 gatgcaggagatacgtggcacgatgcaggagataagagcaagtactgtactgctaccaactccatcgtggcaggatgggctcgaaacgtggcacgat 41317801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 356 - 505
Target Start/End: Complemental strand, 41318034 - 41317867
Alignment:
Q  356 tgttgaaatgtgtctcaaaattgatgttgaagtttggaacaatcgtgacacatttgcagggcaacatggcacgattgaatg------------------g 437  Q
    |||||||||||||||||||||||| |||||||||||||| ||||||| ||| |||| |||||||| |||||||||||||||                  |    
T  41318034 tgttgaaatgtgtctcaaaattgaagttgaagtttggaaaaatcgtggcacgtttgtagggcaacgtggcacgattgaatgacgtggcacgattgaattg 41317935  T
Q  438 ttcagtttttgggttgccactagaaaaatcgtggcacgatccaggaggaacgtgtcatgatgcaggag 505  Q
    ||||||||||||||||||||| |||||||||||||||||| ||||||  ||||| || ||||||||||    
T  41317934 ttcagtttttgggttgccactcgaaaaatcgtggcacgatgcaggagatacgtggcacgatgcaggag 41317867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 543 - 592
Target Start/End: Original strand, 8153095 - 8153144
Alignment:
Q  543 tactgctaccaactccatcgtggcacgatgagctcgaaacgtggcacgat 592  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||    
T  8153095 tactgctaccaactccatcgtggcacgatgggctcgaaacgtggcacgat 8153144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 500 - 592
Target Start/End: Complemental strand, 36146868 - 36146776
Alignment:
Q  500 caggaggaacgtgtcacgatgcaggggataagagcaagaaatatactgctaccaactccatcgtggcacgatgagctcgaaacgtggcacgat 592  Q
    ||||||||||||| ||||||||||| ||||||| |||| | | |||||||||||||  ||| |||| ||||||  ||||||||||||||||||    
T  36146868 caggaggaacgtgacacgatgcaggagataagatcaagtattgtactgctaccaacctcattgtggtacgatggactcgaaacgtggcacgat 36146776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 407 - 491
Target Start/End: Complemental strand, 29160353 - 29160270
Alignment:
Q  407 atttgcagggcaacatggcacgattgaatggttcagtttttgggttgccactagaaaaatcgtggcacgatccaggaggaacgtg 491  Q
    |||||||||||||| |||||||||||  |||||||| ||| |  ||| |||| ||||||||  ||||||||||||||||||||||    
T  29160353 atttgcagggcaacgtggcacgattggttggttcaggtttggctttgtcact-gaaaaatcaaggcacgatccaggaggaacgtg 29160270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 28 - 86
Target Start/End: Complemental strand, 41519284 - 41519227
Alignment:
Q  28 tcaaggtctcaggtgcgcttctcgctagtgtcaagttaggtgggctaatttaacttctt 86  Q
    |||||||||||||| |||||||| || ||||||| ||||||||||||||||| ||||||    
T  41519284 tcaaggtctcaggttcgcttctctct-gtgtcaatttaggtgggctaatttagcttctt 41519227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 28 - 86
Target Start/End: Complemental strand, 48983753 - 48983695
Alignment:
Q  28 tcaaggtctcaggtgcgcttctcgctagtgtcaagttaggtgggctaatttaacttctt 86  Q
    |||||||||||||| || ||| | |||||||||| || |||||||||||||||||||||    
T  48983753 tcaaggtctcaggttcgattccctctagtgtcaatttgggtgggctaatttaacttctt 48983695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 28 - 79
Target Start/End: Original strand, 42712014 - 42712065
Alignment:
Q  28 tcaaggtctcaggtgcgcttctcgctagtgtcaagttaggtgggctaattta 79  Q
    ||||||||||| || || ||||| |||||||||| |||||||||||||||||    
T  42712014 tcaaggtctcatgttcgattctccctagtgtcaatttaggtgggctaattta 42712065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 104; Significance: 2e-51; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 355 - 505
Target Start/End: Original strand, 36773146 - 36773297
Alignment:
Q  355 ttgttgaaatgtgtctcaaaattgatgtt-gaagtttggaacaatcgtgacacatttgcagggcaacatggcacgattgaatggttcagtttttgggttg 453  Q
    ||||||||||||||||||||||||||||| |||||||| || ||||||| ||  ||||||||||||| ||||||||||||||||||||||||||||||||    
T  36773146 ttgttgaaatgtgtctcaaaattgatgtttgaagtttgaaaaaatcgtggcatgtttgcagggcaacgtggcacgattgaatggttcagtttttgggttg 36773245  T
Q  454 ccactagaaaaatcgtggcacgatccaggaggaacgtgtcatgatgcaggag 505  Q
    ||||| ||||||| |||||||||||||||||||||||| || ||||||||||    
T  36773246 ccactggaaaaattgtggcacgatccaggaggaacgtgacacgatgcaggag 36773297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 355 - 502
Target Start/End: Complemental strand, 33162999 - 33162852
Alignment:
Q  355 ttgttgaaatgtgtctcaaaattgatgttgaagtttggaacaatcgtgacacatttgcagggcaacatggcacgattgaatggttcagtttttgggttgc 454  Q
    ||||||||||||||||||||||||||| |||||||||||| ||||||| ||  |||| |||| ||| |||||||||||||||||||||||||||||||||    
T  33162999 ttgttgaaatgtgtctcaaaattgatgatgaagtttggaaaaatcgtggcatgtttgtagggaaacgtggcacgattgaatggttcagtttttgggttgc 33162900  T
Q  455 cactagaaaaatcgtggcacgatccaggaggaacgtgtcatgatgcag 502  Q
    |||| ||||||||||||||||||||||||||||| || || |||||||    
T  33162899 cactggaaaaatcgtggcacgatccaggaggaacatggcacgatgcag 33162852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 422 - 568
Target Start/End: Original strand, 11066957 - 11067103
Alignment:
Q  422 tggcacgattgaatggttcagtttttgggttgccactagaaaaatcgtggcacgatccaggaggaacgtgtcatgatgcaggaggaacgtgtcacgatgc 521  Q
    ||||||||||||| |||||||||||||||||||||||  |||||||||||||||||| ||||||||||||  | ||||||||||||||||| ||||||||    
T  11066957 tggcacgattgaagggttcagtttttgggttgccactgaaaaaatcgtggcacgatctaggaggaacgtgatacgatgcaggaggaacgtgacacgatgc 11067056  T
Q  522 aggggataagagcaagaaatatactgctaccaactccatcgtggcac 568  Q
    | | |||||||||||| | | ||||||||||||||||||||||||||    
T  11067057 atgagataagagcaagtactgtactgctaccaactccatcgtggcac 11067103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 396 - 524
Target Start/End: Complemental strand, 42269976 - 42269847
Alignment:
Q  396 aatcgtgacacatttgcagggcaacatggcacgattgaatggttcagtttttgggtt-gccactagaaaaatcgtggcacgatccaggaggaacgtgtca 494  Q
    ||||||| ||| ||||||||||||| ||||||||||| ||||||||| ||||| ||| | | || |||||||||||||| ||||||||||||||||| ||    
T  42269976 aatcgtggcacgtttgcagggcaacgtggcacgattggatggttcaggttttgcgtttgtcgctggaaaaatcgtggcaggatccaggaggaacgtggca 42269877  T
Q  495 tgatgcaggaggaacgtgtcacgatgcagg 524  Q
    ||||| | |||||||||| |||||| ||||    
T  42269876 tgatggaagaggaacgtgacacgatccagg 42269847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 396 - 524
Target Start/End: Original strand, 34681825 - 34681953
Alignment:
Q  396 aatcgtgacacatttgcagggcaacatggcacgattgaatggttcagtttttgggttgccactagaaaaatcgtggcacgatccaggaggaacgtgtcat 495  Q
    ||||||| ||| ||||||||||||| ||||||||||| ||||||||| ||| || ||| |||| |||||||||||||||||||||| ||||||||| ||     
T  34681825 aatcgtggcacgtttgcagggcaacgtggcacgattggatggttcaggtttgggtttgtcactggaaaaatcgtggcacgatccagtaggaacgtggcac 34681924  T
Q  496 gatgcaggaggaacgtgtcacgatgcagg 524  Q
    |||| | || ||||||| |||||| ||||    
T  34681925 gatggaagatgaacgtgacacgatccagg 34681953  T

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Target: chr2; HSP #6
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 396 - 524
Target Start/End: Complemental strand, 31056650 - 31056521
Alignment:
Q  396 aatcgtgacacatttgcagggcaacatggcacgattgaatggttcagtttttggg-ttgccactagaaaaatcgtggcacgatccaggaggaacgtgtca 494  Q
    ||||||| ||||||||||||||||| |||||| |||| ||||||||| ||||||| ||| |||| |||||||| ||||||||||||| |||||| || ||    
T  31056650 aatcgtggcacatttgcagggcaacgtggcacaattggatggttcagattttgggtttgtcactggaaaaatcatggcacgatccagaaggaacatggca 31056551  T
Q  495 tgatgcaggaggaacgtgtcacgatgcagg 524  Q
     |||| | |||||||||| |||||| ||||    
T  31056550 cgatggaagaggaacgtggcacgatccagg 31056521  T

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Target: chr2; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 526 - 592
Target Start/End: Original strand, 36773297 - 36773363
Alignment:
Q  526 gataagagcaagaaatatactgctaccaactccatcgtggcacgatgagctcgaaacgtggcacgat 592  Q
    ||||||| |||| | | |||||||||||||||||||||||||||||| |||||||||||||||||||    
T  36773297 gataagatcaagtactttactgctaccaactccatcgtggcacgatgggctcgaaacgtggcacgat 36773363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 356 - 394
Target Start/End: Original strand, 11066907 - 11066945
Alignment:
Q  356 tgttgaaatgtgtctcaaaattgatgttgaagtttggaa 394  Q
    ||||||||| |||||||||||||||||||||||||||||    
T  11066907 tgttgaaatttgtctcaaaattgatgttgaagtttggaa 11066945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 555 - 592
Target Start/End: Complemental strand, 8040490 - 8040453
Alignment:
Q  555 ctccatcgtggcacgatgagctcgaaacgtggcacgat 592  Q
    |||||||||||||||||| | |||||||||||||||||    
T  8040490 ctccatcgtggcacgatggggtcgaaacgtggcacgat 8040453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 509 - 590
Target Start/End: Original strand, 26352264 - 26352345
Alignment:
Q  509 cgtgtcacgatgcaggggataagagcaagaaatatactgctaccaactccatcgtggcacgatgagctcgaaacgtggcacg 590  Q
    |||| ||||||||||| ||||||| |||| | | ||||| |||||||||||  ||||||||||| | | | |||||||||||    
T  26352264 cgtggcacgatgcaggagataagatcaagtattgtactgttaccaactccaatgtggcacgatgggttggcaacgtggcacg 26352345  T

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Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 555 - 592
Target Start/End: Complemental strand, 42269794 - 42269757
Alignment:
Q  555 ctccatcgtggcacgatgagctcgaaacgtggcacgat 592  Q
    |||||||||||||||||| || ||||||||||||||||    
T  42269794 ctccatcgtggcacgatgggcacgaaacgtggcacgat 42269757  T

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Target: chr5 (Bit Score: 60; Significance: 3e-25; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 396 - 502
Target Start/End: Complemental strand, 10282315 - 10282208
Alignment:
Q  396 aatcgtgacacatttgcagggcaacatggcacgattgaatggttcagtttttggg-ttgccactagaaaaatcgtggcacgatccaggaggaacgtgtca 494  Q
    ||||||| ||| ||||||||||||| ||||||||||| ||||||||| ||||||| ||| | || |||||||||||||||||||||||||||||||| ||    
T  10282315 aatcgtggcacgtttgcagggcaacgtggcacgattggatggttcaggttttgggtttgtcgctggaaaaatcgtggcacgatccaggaggaacgtggca 10282216  T
Q  495 tgatgcag 502  Q
     |||||||    
T  10282215 cgatgcag 10282208  T

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Target: chr5; HSP #2
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 355 - 486
Target Start/End: Original strand, 28277694 - 28277824
Alignment:
Q  355 ttgttgaaatgtgtctcaaaattgatgttgaagtttggaacaatcgtgacacatttgcagggcaacatggcacgattgaatggttcagtttttgggttgc 454  Q
    |||||||||  || ||||||||||||| |||||| | ||| ||||||| ||| ||||||||||||| ||||||||||| |||||| ||  |||||||||     
T  28277694 ttgttgaaaattgactcaaaattgatggtgaagtctagaaaaatcgtggcacgtttgcagggcaacgtggcacgattggatggtttag-gtttgggttgt 28277792  T
Q  455 cactagaaaaatcgtggcacgatccaggagga 486  Q
    || | ||||||| |||||||||||||||||||    
T  28277793 cattggaaaaattgtggcacgatccaggagga 28277824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 396 - 491
Target Start/End: Complemental strand, 3881337 - 3881241
Alignment:
Q  396 aatcgtgacacatttgcagggcaacatggcacgattgaatggttcagtttttggg-ttgccactagaaaaatcgtggcacgatccaggaggaacgtg 491  Q
    ||||||| ||| ||||||||||||| ||||||||||| ||||||||| ||||||| ||  |  | ||||||||||||||||||||||||||||||||    
T  3881337 aatcgtggcacgtttgcagggcaacgtggcacgattggatggttcaggttttgggtttatcgttggaaaaatcgtggcacgatccaggaggaacgtg 3881241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 28 - 86
Target Start/End: Complemental strand, 17028284 - 17028226
Alignment:
Q  28 tcaaggtctcaggtgcgcttctcgctagtgtcaagttaggtgggctaatttaacttctt 86  Q
    ||||||||||||||  | ||| | |||||||||| ||||||||||||||||| ||||||    
T  17028284 tcaaggtctcaggtttgattccctctagtgtcaatttaggtgggctaatttagcttctt 17028226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 46 - 86
Target Start/End: Complemental strand, 17877162 - 17877122
Alignment:
Q  46 ttctcgctagtgtcaagttaggtgggctaatttaacttctt 86  Q
    ||||| || ||||||| ||||||||||||||||||||||||    
T  17877162 ttctctctggtgtcaatttaggtgggctaatttaacttctt 17877122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0477 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 2)
Name: scaffold0477
Description:

Target: scaffold0477; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 396 - 524
Target Start/End: Original strand, 5447 - 5577
Alignment:
Q  396 aatcgtgacacatttgcagggcaacatggcacgattgaatggttcagtttttggg-ttgccactagaaaaat-cgtggcacgatccaggaggaacgtgtc 493  Q
    |||| |||||| ||||||||||||| ||||||||||  ||||||||| ||||||| ||| | || ||||||| ||||||||||| ||| | ||||||| |    
T  5447 aatcatgacacgtttgcagggcaacgtggcacgattagatggttcagattttgggtttgtcgctggaaaaatacgtggcacgatgcagaaagaacgtggc 5546  T
Q  494 atgatgcaggaggaacgtgtcacgatgcagg 524  Q
    | |||| | |||||||||| |||||| ||||    
T  5547 acgatggaagaggaacgtggcacgatccagg 5577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0477; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 550 - 592
Target Start/End: Original strand, 5625 - 5667
Alignment:
Q  550 accaactccatcgtggcacgatgagctcgaaacgtggcacgat 592  Q
    ||||||||||||||||||||||| || || |||||||||||||    
T  5625 accaactccatcgtggcacgatgggcacgtaacgtggcacgat 5667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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