View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4081_low_23 (Length: 332)
Name: NF4081_low_23
Description: NF4081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4081_low_23 |
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| [»] scaffold0009 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 17 - 319
Target Start/End: Complemental strand, 5928642 - 5928337
Alignment:
| Q |
17 |
taaactctatgcatgagtgtggaaaacaatatgccattgaaatgttataacnnnnnnngatgcactaaaatagaagatcagttaatactaataactataa |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |||||||||||||||| |||||||||||||||||| |
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| T |
5928642 |
taaactctatgcatgagtgtggaaaacaatatgccattgaaatgttatagcaagaaaagatgcagtaaaatagaagatcagctaatactaataactataa |
5928543 |
T |
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| Q |
117 |
atctcgcnnnnnnnnnn---gcatgagtttaggacatctatttattctcactgctaaaacaattacaacatttgaatatgaaggaatccaatacattctt |
213 |
Q |
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||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| |
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| T |
5928542 |
atctcgcaaaaaaaaaaaatgcatgagtttaggacatctatctattctcactgctaaaacaattacaacatttgaatctgaaggaatccattacattctt |
5928443 |
T |
|
| Q |
214 |
ggcaaatgcttcattatgatgcttaaacttgtctactcaaaccatcaacaatgtctcaatccacaaacataagaaatcatggcattgcaaataactatga |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5928442 |
ggcaaatgcttcattatgatgcttaaacttgtctactcaaaccatcaacaatgtctcaatccacaaacataagaaatcatggcattgcaaataactatga |
5928343 |
T |
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| Q |
314 |
tcagaa |
319 |
Q |
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|||||| |
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| T |
5928342 |
tcagaa |
5928337 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 54; Significance: 5e-22; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 146 - 219
Target Start/End: Original strand, 44174637 - 44174710
Alignment:
| Q |
146 |
gacatctatttattctcactgctaaaacaattacaacatttgaatatgaaggaatccaatacattcttggcaaa |
219 |
Q |
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| T |
44174637 |
gacatctatctattctcactgcttaaacaattacaacatttgaatctgaatgaatccaagacattcttggcaaa |
44174710 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 44174506 - 44174554
Alignment:
| Q |
17 |
taaactctatgcatgagtgtggaaaacaatatgccattgaaatgttata |
65 |
Q |
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|||| ||||||||||||||| ||||||||||||||| |||||| ||||| |
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| T |
44174506 |
taaaatctatgcatgagtgttgaaaacaatatgccagtgaaatattata |
44174554 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 278 - 306
Target Start/End: Original strand, 200442 - 200470
Alignment:
| Q |
278 |
aaacataagaaatcatggcattgcaaata |
306 |
Q |
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| T |
200442 |
aaacataagaaatcatggcattgcaaata |
200470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 278 - 306
Target Start/End: Original strand, 22714569 - 22714597
Alignment:
| Q |
278 |
aaacataagaaatcatggcattgcaaata |
306 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
22714569 |
aaacataagaaatcatggcattgcaaata |
22714597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 278 - 306
Target Start/End: Complemental strand, 22990656 - 22990628
Alignment:
| Q |
278 |
aaacataagaaatcatggcattgcaaata |
306 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
22990656 |
aaacataagaaatcatggcattgcaaata |
22990628 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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