View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4081_low_27 (Length: 314)
Name: NF4081_low_27
Description: NF4081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4081_low_27 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 16 - 290
Target Start/End: Complemental strand, 45974333 - 45974059
Alignment:
| Q |
16 |
ggaagctgaattgtattttactcttaagaaacttagaagacagattgataagtataatcgcgtagttgcgatgtttaaagcgggatatggttttccgata |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45974333 |
ggaagctgaattgtattttactcttaagaaacttagaagacagattgataagtataatcgcgtagttgcgatgtttaaagcgggatatggttttccgata |
45974234 |
T |
|
| Q |
116 |
aagaggaaatgtgatatgctatagtgctaataataatggaggtactggtaactgaaaaacacagagaaaacgtgaatgtgatggtgatgtaatgtggttg |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45974233 |
aagaggaaatgtgatatgctatagtgctaataataatggaggtactggtaactgaaaaacacagagaaaacgtgaatgtgatggtgatgtaatgtggttg |
45974134 |
T |
|
| Q |
216 |
gttgtgaacttgtgacattgtgcactgttgatttaacttgtaatgggttggagagttgcaaaatagtcaatgcca |
290 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45974133 |
gttgtgaacttgtgacattgtgcactgttgatttaacttgtaatgggttggagagttgcaaaatagtcaatgcca |
45974059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University