View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4081_low_28 (Length: 304)
Name: NF4081_low_28
Description: NF4081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4081_low_28 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 153; Significance: 4e-81; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 17 - 212
Target Start/End: Original strand, 4194915 - 4195110
Alignment:
| Q |
17 |
atggatatataaagttcgaaatccgatctttcatcaattttatatagtcaacatttcattttctctttaactttttctatccatcacattatcaatttat |
116 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4194915 |
atggatatataaagttcgaaatccggtctttcatcaattttatatagtcaacatttcattttctctttaactttttctatccatcacattatcaatttat |
4195014 |
T |
|
| Q |
117 |
catatccctctctcatatatctatctctcaagtgatagattgccatttggttgtttnnnnnnnnnttgctgaaaggaaaaagataccaaaacaacg |
212 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| |||| |
|
|
| T |
4195015 |
catatcactctctcatatatctatctctcaagtgatagattgccatttggttgtttaaaaaaaaattgctgaaaggaaaaaaataccaaaataacg |
4195110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 69 - 112
Target Start/End: Original strand, 4226071 - 4226114
Alignment:
| Q |
69 |
atttcattttctctttaactttttctatccatcacattatcaat |
112 |
Q |
| |
|
||||||||| |||||| |||||||||||||||||||||||||| |
|
|
| T |
4226071 |
atttcatttgatctttatctttttctatccatcacattatcaat |
4226114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University