View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4081_low_3 (Length: 608)
Name: NF4081_low_3
Description: NF4081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4081_low_3 |
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| [»] chr8 (4 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 518; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 518; E-Value: 0
Query Start/End: Original strand, 6 - 608
Target Start/End: Original strand, 41805402 - 41806012
Alignment:
| Q |
6 |
tgttggaggagctgcagggtaaaagggaagaggaattaactctgagggaaaaggttgaaaagctagaggcaaaggcaagaaagggggaa-tcagagaaga |
104 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
41805402 |
tgttggaggagctgcagggtaaaagggaagaggaattaactctgagggaaaaggttgaaaagctagaggcaaaggcaagaaagggggaaatcagagaaga |
41805501 |
T |
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| Q |
105 |
tgaatgtgacaacaattgttgttgaacttaagaagtgagttgaagagctagagaagttgatggaagagaaagaggagggtatgttgaacttgggagagga |
204 |
Q |
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| T |
41805502 |
tgaatgtgacaacaattgttgttgaacttaagaagagagttgaagagctagagaagttgatggaagagaaagaggagggtatgttgaacttgggagagga |
41805601 |
T |
|
| Q |
205 |
aaagagggaggccatcaggcagctttgtttgcggattgattatcacagggagcgcaatgactatctaaaggaattcatatcaaagactcgccggggccag |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41805602 |
aaagagggaggccatcaggcagctttgtttgcggattgattatcacagggagcgcaatgactatctaaaggaattcatatcaaagactcgccggggccag |
41805701 |
T |
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| Q |
305 |
agagcaatgtgaacccatctata-nnnnnnnatgcaactttgtccaattaggtactgtcgtgatttgacaaacatgagtatgtgtatagttatannnnnn |
403 |
Q |
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|||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41805702 |
agagcagtgtgaacccatctatattttttttatgcaactttgtccaattaggtactgtcgtgatttgacaaacatgagtatgtgtatagttatatttttt |
41805801 |
T |
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| Q |
404 |
nccctgtat------caaagttagttctgttcttctcttgaatttgaattgaataatcttagtgacgtcttattgttttgttcagtatagaacgttgggt |
497 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
41805802 |
tccctgtatcagtagcaaagttagttctgttcttctcttgaatttgaattgaataatcttagtgacgtcttattgttttgttcagtatagaacgctgggt |
41805901 |
T |
|
| Q |
498 |
taacatgtcccactatcaaaattttccagttcttacccgtctttgatgctttttattttacattttatcatatatttctagaaactagctagcagtgata |
597 |
Q |
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| T |
41805902 |
taacatgtcccactatcaaaattttccagttcttacccgtctttgatgctttttattttacattttatcatatatttctagaaactagctagcagtgata |
41806001 |
T |
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| Q |
598 |
gttaacttgat |
608 |
Q |
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||||||||||| |
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| T |
41806002 |
gttaacttgat |
41806012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 173; E-Value: 1e-92
Query Start/End: Original strand, 6 - 310
Target Start/End: Original strand, 41799017 - 41799321
Alignment:
| Q |
6 |
tgttggaggagctgcagggtaaaagggaagaggaattaactctgagggaaaaggttgaaaagctagaggcaaaggcaagaaagggggaatcagagaagat |
105 |
Q |
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|||| ||||| ||||||||||||| ||||| ||||||||||||||||||||||||||| |||||||||| ||||||||||||| ||||||||||||||| |
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| T |
41799017 |
tgttagaggaactgcagggtaaaaaggaaggggaattaactctgagggaaaaggttgagaagctagaggtgaaggcaagaaaggaggaatcagagaagat |
41799116 |
T |
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| Q |
106 |
gaatgtgacaacaattgttgttgaacttaagaagtgagttgaagagctagagaagttgatggaagagaaagaggagggtatgttgaacttgggagaggaa |
205 |
Q |
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| T |
41799117 |
gaatgtgacagcaactgttgttgaacttaagaagacagttggagagctagagaagtcgatgaaagagaaagaggaaggcatattggatttgggagaggaa |
41799216 |
T |
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| Q |
206 |
aagagggaggccatcaggcagctttgtttgcggattgattatcacagggagcgcaatgactatctaaaggaattcatatcaaagactcgccggggccaga |
305 |
Q |
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||||||||||||||||||||||| |||||| |||||||||||||| | ||| | | |||| ||| |||||| ||||||||||||| ||| ||||||||| |
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| T |
41799217 |
aagagggaggccatcaggcagctctgtttgtggattgattatcaccgtgagagtagtgaccgtctcaaggaaatcatatcaaagacacgcaggggccaga |
41799316 |
T |
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| Q |
306 |
gagca |
310 |
Q |
| |
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||||| |
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| T |
41799317 |
gagca |
41799321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 153; E-Value: 9e-81
Query Start/End: Original strand, 8 - 308
Target Start/End: Original strand, 41812235 - 41812535
Alignment:
| Q |
8 |
ttggaggagctgcagggtaaaagggaagaggaattaactctgagggaaaaggttgaaaagctagaggcaaaggcaagaaagggggaatcagagaagatga |
107 |
Q |
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||||||||| |||||||||||| |||||||| || ||||||| | || ||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
41812235 |
ttggaggagttgcagggtaaaaaggaagagggatcaactctgcagaaagaggttgaaaagctagaggcaaaggcaagaaaggaggaatcagagaagatga |
41812334 |
T |
|
| Q |
108 |
atgtgacaacaattgttgttgaacttaagaagtgagttgaagagctagagaagttgatggaagagaaagaggagggtatgttgaacttgggagaggaaaa |
207 |
Q |
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|||||||| ||| ||||| ||||||||||||| ||||||||||||| |||||||||| ||||||||||||| || || ||| | |||||||||||||| |
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| T |
41812335 |
atgtgacagcaactgttgatgaacttaagaagacagttgaagagctacagaagttgataaaagagaaagaggaaggaatattggatttgggagaggaaaa |
41812434 |
T |
|
| Q |
208 |
gagggaggccatcaggcagctttgtttgcggattgattatcacagggagcgcaatgactatctaaaggaattcatatcaaagactcgccggggccagaga |
307 |
Q |
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||||||||||||||||||||| |||||| ||||||||||||| | ||| | |||| |||||| |||| | |||| |||||||||| ||||||||||| |
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| T |
41812435 |
gagggaggccatcaggcagctctgtttgttgattgattatcaccgcgagtgtaatgtctatctcaagggaatcatctcaaagactcaaaggggccagaga |
41812534 |
T |
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| Q |
308 |
g |
308 |
Q |
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| T |
41812535 |
g |
41812535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 416 - 562
Target Start/End: Original strand, 41799488 - 41799633
Alignment:
| Q |
416 |
agttagttctgttcttctcttgaatttgaattgaataatcttagtgacgtcttattgttttgttcagtatagaacgttgggttaacatgtcccactatca |
515 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || |||| | ||||||||||| ||| | |
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| T |
41799488 |
agttagtcctgttcttctcttgaatttgaattgaataatcttagtgaggtcttattgttttgttcagtatacaaatttggatgaacatgtcccattatta |
41799587 |
T |
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| Q |
516 |
aaattttccagttcttacccgtctttgatgctttttattttacattt |
562 |
Q |
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|| ||| ||| |||||||||||||||||||| ||||||||||||||| |
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| T |
41799588 |
aattttgccaattcttacccgtctttgatgc-ttttattttacattt |
41799633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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