View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4081_low_32 (Length: 294)

Name: NF4081_low_32
Description: NF4081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4081_low_32
NF4081_low_32
[»] chr2 (6 HSPs)
chr2 (20-186)||(1233603-1233770)
chr2 (232-286)||(1233816-1233870)
chr2 (129-185)||(35029861-35029917)
chr2 (129-185)||(34229074-34229130)
chr2 (240-285)||(41282855-41282900)
chr2 (129-185)||(34228160-34228216)
[»] chr3 (5 HSPs)
chr3 (129-186)||(40809592-40809649)
chr3 (129-186)||(40810284-40810341)
chr3 (129-185)||(35903702-35903758)
chr3 (129-186)||(8922897-8922954)
chr3 (129-186)||(41325835-41325892)
[»] chr4 (3 HSPs)
chr4 (130-185)||(44516799-44516854)
chr4 (129-185)||(32159521-32159577)
chr4 (129-185)||(39311371-39311427)
[»] chr8 (5 HSPs)
chr8 (129-178)||(8814483-8814532)
chr8 (123-180)||(17943018-17943075)
chr8 (129-186)||(42578722-42578779)
chr8 (133-185)||(11519367-11519419)
chr8 (129-185)||(38444464-38444520)
[»] chr6 (2 HSPs)
chr6 (140-180)||(34260140-34260180)
chr6 (140-180)||(34262190-34262230)
[»] scaffold0402 (1 HSPs)
scaffold0402 (144-180)||(10884-10920)
[»] chr1 (1 HSPs)
chr1 (129-185)||(7338798-7338854)


Alignment Details
Target: chr2 (Bit Score: 128; Significance: 3e-66; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 20 - 186
Target Start/End: Original strand, 1233603 - 1233770
Alignment:
Q  20 agttcaatttgatatagttggtgaatacctttagtatttcaattacnnnnnnnn-ggtacaatttacctatcacattttaatcccccctccaatttaccg 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||||||||     
T  1233603 agttcaatttgatatagttggtgaatacctttagtatttcaattactttttttttggtacaatttacctatcacattttaatcccccctccaatttacca 1233702  T
Q  119 gtctatttttctccatttaggtttcctcaatttacctcatttgaagtcatggatgtgtgacacgtggc 186  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  1233703 gtctatttttctccatttaggtttcctcaatttaccccatttgaagtcatggatgtgtgacacgtggc 1233770  T

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Target: chr2; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 232 - 286
Target Start/End: Original strand, 1233816 - 1233870
Alignment:
Q  232 ctagttcttctcttgtatctgaaacaacacaccagtctcctttcttcttcttctc 286  Q
    ||||||||||||||||||| ||| |||||||||||||||||||||||||||||||    
T  1233816 ctagttcttctcttgtatccgaagcaacacaccagtctcctttcttcttcttctc 1233870  T

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Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 129 - 185
Target Start/End: Complemental strand, 35029917 - 35029861
Alignment:
Q  129 ctccatttaggtttcctcaatttacctcatttgaagtcatggatgtgtgacacgtgg 185  Q
    |||||||||||||||||||||||||| ||||| ||||||| ||||||||||| ||||    
T  35029917 ctccatttaggtttcctcaatttaccccatttcaagtcatagatgtgtgacatgtgg 35029861  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 129 - 185
Target Start/End: Complemental strand, 34229130 - 34229074
Alignment:
Q  129 ctccatttaggtttcctcaatttacctcatttgaagtcatggatgtgtgacacgtgg 185  Q
    ||||||||| | |||||||||||||| ||||| ||||||| ||||||||||| ||||    
T  34229130 ctccatttaagattcctcaatttaccccattttaagtcatagatgtgtgacatgtgg 34229074  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 285
Target Start/End: Complemental strand, 41282900 - 41282855
Alignment:
Q  240 tctcttgtatctgaaacaacacaccagtctcctttcttcttcttct 285  Q
    |||||||||||||||||||||| || | | ||||||||||||||||    
T  41282900 tctcttgtatctgaaacaacacgcctgccacctttcttcttcttct 41282855  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 129 - 185
Target Start/End: Original strand, 34228160 - 34228216
Alignment:
Q  129 ctccatttaggtttcctcaatttacctcatttgaagtcatggatgtgtgacacgtgg 185  Q
    ||||||||| | |||||||||||||| ||||| |||| || ||||||||||| ||||    
T  34228160 ctccatttaagattcctcaatttaccccatttcaagttatagatgtgtgacatgtgg 34228216  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 129 - 186
Target Start/End: Original strand, 40809592 - 40809649
Alignment:
Q  129 ctccatttaggtttcctcaatttacctcatttgaagtcatggatgtgtgacacgtggc 186  Q
    |||||||| |||||||||||||||   ||||| |||||||||||||||||||||||||    
T  40809592 ctccatttgggtttcctcaatttattccattttaagtcatggatgtgtgacacgtggc 40809649  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 129 - 186
Target Start/End: Complemental strand, 40810341 - 40810284
Alignment:
Q  129 ctccatttaggtttcctcaatttacctcatttgaagtcatggatgtgtgacacgtggc 186  Q
    ||||||||| |||||||||||||| | ||||| |||||||||||||||||||| ||||    
T  40810341 ctccatttaagtttcctcaatttatcccattttaagtcatggatgtgtgacacatggc 40810284  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 129 - 185
Target Start/End: Original strand, 35903702 - 35903758
Alignment:
Q  129 ctccatttaggtttcctcaatttacctcatttgaagtcatggatgtgtgacacgtgg 185  Q
    |||||||||||||  ||||||||||| ||||| |||| |||||||||||||| ||||    
T  35903702 ctccatttaggttctctcaatttaccccatttcaagttatggatgtgtgacatgtgg 35903758  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 186
Target Start/End: Original strand, 8922897 - 8922954
Alignment:
Q  129 ctccatttaggtttcctcaatttacctcatttgaagtcatggatgtgtgacacgtggc 186  Q
    |||||||||||||| ||||||||||| |||||    |||||||||||||||| |||||    
T  8922897 ctccatttaggtttgctcaatttaccccatttatcatcatggatgtgtgacatgtggc 8922954  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 186
Target Start/End: Original strand, 41325835 - 41325892
Alignment:
Q  129 ctccatttaggtttcctcaatttacctcatttgaagtcatggatgtgtgacacgtggc 186  Q
    |||||||||||||| ||||||||||| |||||    |||||||||||||||| |||||    
T  41325835 ctccatttaggtttgctcaatttaccccatttatcatcatggatgtgtgacatgtggc 41325892  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 130 - 185
Target Start/End: Original strand, 44516799 - 44516854
Alignment:
Q  130 tccatttaggtttcctcaatttacctcatttgaagtcatggatgtgtgacacgtgg 185  Q
    |||||||||||||||| |||||||||||||| |||| || ||||||||||| ||||    
T  44516799 tccatttaggtttccttaatttacctcattttaagtgatagatgtgtgacatgtgg 44516854  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 129 - 185
Target Start/End: Complemental strand, 32159577 - 32159521
Alignment:
Q  129 ctccatttaggtttcctcaatttacctcatttgaagtcatggatgtgtgacacgtgg 185  Q
    |||||||||||||||||||||||||| ||||| |   | ||||||||||||| ||||    
T  32159577 ctccatttaggtttcctcaatttaccccatttcattccttggatgtgtgacatgtgg 32159521  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 129 - 185
Target Start/End: Complemental strand, 39311427 - 39311371
Alignment:
Q  129 ctccatttaggtttcctcaatttacctcatttgaagtcatggatgtgtgacacgtgg 185  Q
    ||||||||| | || ||||||||||| ||||| ||||||| ||||||||||| ||||    
T  39311427 ctccatttaagatttctcaatttaccccattttaagtcatagatgtgtgacatgtgg 39311371  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 129 - 178
Target Start/End: Complemental strand, 8814532 - 8814483
Alignment:
Q  129 ctccatttaggtttcctcaatttacctcatttgaagtcatggatgtgtga 178  Q
    |||||||| ||||||||||||||||| ||||  |||||||||||||||||    
T  8814532 ctccattttggtttcctcaatttaccccattacaagtcatggatgtgtga 8814483  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 180
Target Start/End: Complemental strand, 17943075 - 17943018
Alignment:
Q  123 atttttctccatttaggtttcctcaatttacctcatttgaagtcatggatgtgtgaca 180  Q
    ||||| ||||||||   ||| ||||||||||| ||||||||| |||||||||||||||    
T  17943075 attttgctccatttcactttgctcaatttaccccatttgaagacatggatgtgtgaca 17943018  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 186
Target Start/End: Original strand, 42578722 - 42578779
Alignment:
Q  129 ctccatttaggtttcctcaatttacctcatttgaagtcatggatgtgtgacacgtggc 186  Q
    ||||||||| |||| ||||||||||| ||||| ||||||| ||||| ||||| |||||    
T  42578722 ctccatttatgtttgctcaatttaccccatttcaagtcatagatgtatgacatgtggc 42578779  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 133 - 185
Target Start/End: Original strand, 11519367 - 11519419
Alignment:
Q  133 atttaggtttcctcaatttacctcatttgaagtcatggatgtgtgacacgtgg 185  Q
    ||||||||||| |||||||||| ||||| || |||| ||||||||||| ||||    
T  11519367 atttaggtttcttcaatttaccccatttcaaatcatagatgtgtgacatgtgg 11519419  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 129 - 185
Target Start/End: Complemental strand, 38444520 - 38444464
Alignment:
Q  129 ctccatttaggtttcctcaatttacctcatttgaagtcatggatgtgtgacacgtgg 185  Q
    |||||||||| |||||||||||||||  |||| |||| || ||||||||||| ||||    
T  38444520 ctccatttagatttcctcaatttacccaatttcaagttatagatgtgtgacatgtgg 38444464  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 140 - 180
Target Start/End: Original strand, 34260140 - 34260180
Alignment:
Q  140 tttcctcaatttacctcatttgaagtcatggatgtgtgaca 180  Q
    ||||||||||||||| ||||| |||||||||||||||||||    
T  34260140 tttcctcaatttaccccatttcaagtcatggatgtgtgaca 34260180  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 140 - 180
Target Start/End: Complemental strand, 34262230 - 34262190
Alignment:
Q  140 tttcctcaatttacctcatttgaagtcatggatgtgtgaca 180  Q
    ||||||||||||||| ||||| |||| ||||||||||||||    
T  34262230 tttcctcaatttaccccattttaagttatggatgtgtgaca 34262190  T

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Target: scaffold0402 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0402
Description:

Target: scaffold0402; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 144 - 180
Target Start/End: Original strand, 10884 - 10920
Alignment:
Q  144 ctcaatttacctcatttgaagtcatggatgtgtgaca 180  Q
    ||||||||||| ||||||||| |||||||||||||||    
T  10884 ctcaatttaccccatttgaagacatggatgtgtgaca 10920  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 129 - 185
Target Start/End: Complemental strand, 7338854 - 7338798
Alignment:
Q  129 ctccatttaggtttcctcaatttacctcatttgaagtcatggatgtgtgacacgtgg 185  Q
    ||||||||| |||||||||||||||  ||||| ||||||| ||||||| ||| ||||    
T  7338854 ctccatttatgtttcctcaatttactccatttcaagtcatagatgtgtaacatgtgg 7338798  T

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