View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4081_low_34 (Length: 282)
Name: NF4081_low_34
Description: NF4081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4081_low_34 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 11 - 282
Target Start/End: Original strand, 778199 - 778465
Alignment:
| Q |
11 |
catcatcattggtgccaaacccaaattcatccccgtcattgttaaagtgaaatattacgccatttagcaaaatggaaacaccaaagaatattcaactcaa |
110 |
Q |
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| T |
778199 |
catcatcattggtgccaaacccaaattcgtccccgtcattgttaaagtgaaatattacgccatttagcaaaatggaaacaccaaagaatattcaactcaa |
778298 |
T |
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| Q |
111 |
tgaagtgaggtgagggcttcaaatcacttccaatatgatcaataccaaaccacaccattcaaattcatcacaaattttaccctcattttcaaaatcgata |
210 |
Q |
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| T |
778299 |
tgaagtga-----gggcttcaaaacacttccaatatgatcaataccaaaccacaccattcaaattcatcactaattttaccctcattttcaaaatcgata |
778393 |
T |
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| Q |
211 |
tttcaaacacttacaaaatcatcattaaagaggaaacaagttgaagatgcaaaggaaaatgagaaatcgaac |
282 |
Q |
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||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
778394 |
tttcaaacacttacaaaatcatcatcaaagagaaaacaagttgaagatgcaaaggaaaatgagaaatcgaac |
778465 |
T |
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