View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4081_low_37 (Length: 249)

Name: NF4081_low_37
Description: NF4081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4081_low_37
NF4081_low_37
[»] chr3 (13 HSPs)
chr3 (1-180)||(3618421-3618600)
chr3 (188-243)||(35534481-35534536)
chr3 (185-243)||(36404257-36404315)
chr3 (185-241)||(37115924-37115980)
chr3 (189-243)||(45602984-45603038)
chr3 (178-243)||(29360471-29360536)
chr3 (190-243)||(39391958-39392011)
chr3 (186-243)||(46487267-46487323)
chr3 (185-227)||(14201713-14201755)
chr3 (185-230)||(52742348-52742393)
chr3 (201-243)||(16353524-16353566)
chr3 (203-243)||(3618375-3618415)
chr3 (192-240)||(48944143-48944191)
[»] chr8 (18 HSPs)
chr8 (185-243)||(22798537-22798595)
chr8 (185-243)||(16655974-16656032)
chr8 (185-243)||(23403594-23403652)
chr8 (185-243)||(30204683-30204741)
chr8 (185-241)||(4234174-4234230)
chr8 (189-243)||(3001412-3001466)
chr8 (189-243)||(4623885-4623939)
chr8 (185-238)||(23275567-23275620)
chr8 (185-243)||(14842304-14842362)
chr8 (189-230)||(4414226-4414267)
chr8 (180-243)||(36470170-36470234)
chr8 (185-241)||(37629998-37630054)
chr8 (189-240)||(21567707-21567758)
chr8 (192-243)||(39436844-39436895)
chr8 (190-232)||(45310061-45310103)
chr8 (185-238)||(29958554-29958607)
chr8 (192-243)||(36046564-36046614)
chr8 (190-227)||(41787497-41787534)
[»] chr5 (17 HSPs)
chr5 (185-243)||(3729368-3729426)
chr5 (185-243)||(34766919-34766977)
chr5 (177-230)||(9793780-9793833)
chr5 (190-243)||(39508351-39508404)
chr5 (189-243)||(8159105-8159159)
chr5 (185-243)||(25081763-25081821)
chr5 (185-243)||(25139732-25139790)
chr5 (192-241)||(21020686-21020735)
chr5 (193-242)||(21583853-21583902)
chr5 (189-243)||(2068963-2069015)
chr5 (185-232)||(41929337-41929384)
chr5 (179-227)||(3711172-3711220)
chr5 (191-230)||(9793683-9793722)
chr5 (185-232)||(9913798-9913845)
chr5 (187-243)||(20815668-20815724)
chr5 (185-233)||(20736203-20736251)
chr5 (185-217)||(38451089-38451121)
[»] chr1 (14 HSPs)
chr1 (185-243)||(41998914-41998972)
chr1 (186-238)||(39001944-39001996)
chr1 (185-240)||(1585856-1585911)
chr1 (190-243)||(794914-794967)
chr1 (185-230)||(6750358-6750403)
chr1 (187-243)||(26653975-26654031)
chr1 (192-243)||(18808781-18808832)
chr1 (188-233)||(3695405-3695450)
chr1 (186-243)||(4792603-4792660)
chr1 (186-239)||(11121854-11121907)
chr1 (187-242)||(571645-571700)
chr1 (185-243)||(24909543-24909601)
chr1 (190-239)||(9224863-9224912)
chr1 (185-232)||(44272403-44272451)
[»] scaffold0306 (1 HSPs)
scaffold0306 (187-243)||(13091-13147)
[»] scaffold0152 (1 HSPs)
scaffold0152 (187-243)||(22180-22236)
[»] chr2 (19 HSPs)
chr2 (187-243)||(21423363-21423419)
chr2 (185-241)||(37140171-37140227)
chr2 (187-241)||(5958964-5959018)
chr2 (185-243)||(37060114-37060172)
chr2 (186-243)||(24475967-24476024)
chr2 (185-243)||(13274197-13274255)
chr2 (185-243)||(30609721-30609779)
chr2 (189-242)||(37802872-37802925)
chr2 (190-238)||(30393632-30393680)
chr2 (188-243)||(6974552-6974607)
chr2 (193-243)||(15070425-15070475)
chr2 (185-243)||(27004445-27004503)
chr2 (186-243)||(28107523-28107580)
chr2 (195-243)||(4382213-4382261)
chr2 (190-232)||(10217401-10217443)
chr2 (198-243)||(27404650-27404695)
chr2 (190-233)||(22194328-22194371)
chr2 (185-230)||(5807368-5807412)
chr2 (195-243)||(43022916-43022964)
[»] chr4 (12 HSPs)
chr4 (185-243)||(35929703-35929761)
chr4 (191-240)||(12701040-12701089)
chr4 (185-242)||(53584602-53584659)
chr4 (191-243)||(21555382-21555434)
chr4 (190-241)||(56100175-56100226)
chr4 (186-243)||(36609448-36609506)
chr4 (189-242)||(19598367-19598420)
chr4 (185-240)||(44243734-44243789)
chr4 (185-243)||(23249466-23249524)
chr4 (189-242)||(35749385-35749438)
chr4 (190-243)||(41842789-41842842)
chr4 (200-243)||(827840-827883)
[»] scaffold0532 (1 HSPs)
scaffold0532 (190-242)||(11320-11372)
[»] chr6 (8 HSPs)
chr6 (192-243)||(2814925-2814976)
chr6 (185-243)||(1067796-1067854)
chr6 (190-243)||(444522-444575)
chr6 (185-242)||(24640388-24640445)
chr6 (185-241)||(26394026-26394082)
chr6 (185-243)||(6200197-6200255)
chr6 (185-231)||(12324168-12324214)
chr6 (189-242)||(23774069-23774122)
[»] scaffold0302 (1 HSPs)
scaffold0302 (185-243)||(18538-18596)
[»] scaffold0025 (1 HSPs)
scaffold0025 (185-240)||(67868-67923)
[»] chr7 (6 HSPs)
chr7 (176-243)||(41326028-41326095)
chr7 (189-243)||(8163678-8163732)
chr7 (189-243)||(40337101-40337155)
chr7 (189-243)||(2362417-2362471)
chr7 (191-238)||(35589447-35589494)
chr7 (190-227)||(31637707-31637744)
[»] scaffold1248 (1 HSPs)
scaffold1248 (191-241)||(970-1020)
[»] scaffold0952 (1 HSPs)
scaffold0952 (191-241)||(1293-1343)
[»] scaffold0140 (1 HSPs)
scaffold0140 (186-243)||(21473-21530)
[»] scaffold0121 (1 HSPs)
scaffold0121 (186-241)||(37440-37495)


Alignment Details
Target: chr3 (Bit Score: 148; Significance: 3e-78; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 1 - 180
Target Start/End: Complemental strand, 3618600 - 3618421
Alignment:
Q  1 tgttctttccaaaatagcatgtccttcttgttccggtggcaattgttttcttgaccgtaagttgagctatacaactttcaaatcattctttacttgttac 100  Q
    ||||||||||||||||||| ||| |||||||||  ||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||    
T  3618600 tgttctttccaaaatagcacgtcgttcttgttctagtggcaattgttttcttgaccataagttgagctatacaactttcaaatcatgctttacttgttac 3618501  T
Q  101 ttcagaaatctaaatgccatgcttttgattagaaaatctctgtccaaatttgttcttagctaatatcacctttcctaaaa 180  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||    
T  3618500 ttcagaaatctaaatgccatgcttttgattagaaaatctctgttcaaatttgttcttagctactatcacctttcctaaaa 3618421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 188 - 243
Target Start/End: Original strand, 35534481 - 35534536
Alignment:
Q  188 cctgtttgaaatagtttttgttttcagtttttgaaatatacaagtcttcttctcac 243  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  35534481 cctgtttaaaatagtttttgttttcagtttttgaaatatacaagtcttcttctcac 35534536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 185 - 243
Target Start/End: Complemental strand, 36404315 - 36404257
Alignment:
Q  185 gagcctgtttgaaatagtttttgttttcagtttttgaaatatacaagtcttcttctcac 243  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  36404315 gagcctctttgaaatagtttttgttttcagtttttgaaatatacaagtcctcttctcac 36404257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 185 - 241
Target Start/End: Complemental strand, 37115980 - 37115924
Alignment:
Q  185 gagcctgtttgaaatagtttttgttttcagtttttgaaatatacaagtcttcttctc 241  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||    
T  37115980 gagcctgtttgaaatagtttttgttttcagtttttgaaatatataagtcatcttctc 37115924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 189 - 243
Target Start/End: Original strand, 45602984 - 45603038
Alignment:
Q  189 ctgtttgaaatagtttttgttttcagtttttgaaatatacaagtcttcttctcac 243  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||| ||||    
T  45602984 ctgtttgaaatagtttttgttttcagtttttgaaatatacaagtcatcttatcac 45603038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 178 - 243
Target Start/End: Original strand, 29360471 - 29360536
Alignment:
Q  178 aaattacgagcctgtttgaaatagtttttgttttcagtttttgaaatatacaagtcttcttctcac 243  Q
    |||||| |||||||||||||| | ||||| |||||||||||||||||||||||||| |||||||||    
T  29360471 aaattaagagcctgtttgaaacaatttttcttttcagtttttgaaatatacaagtcctcttctcac 29360536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 190 - 243
Target Start/End: Original strand, 39391958 - 39392011
Alignment:
Q  190 tgtttgaaatagtttttgttttcagtttttgaaatatacaagtcttcttctcac 243  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||    
T  39391958 tgtttgaaatagtttttgttttcagtttttgaaatatacaagttttcttttcac 39392011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 186 - 243
Target Start/End: Original strand, 46487267 - 46487323
Alignment:
Q  186 agcctgtttgaaatagtttttgttttcagtttttgaaatatacaagtcttcttctcac 243  Q
    ||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||    
T  46487267 agcctgtttgaaatagttttt-ttttcagtttttgaaatatataagtcttcttctcac 46487323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 185 - 227
Target Start/End: Original strand, 14201713 - 14201755
Alignment:
Q  185 gagcctgtttgaaatagtttttgttttcagtttttgaaatata 227  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  14201713 gagcctgtttgaaatagtttttgttttcagtttttgaaatata 14201755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 185 - 230
Target Start/End: Original strand, 52742348 - 52742393
Alignment:
Q  185 gagcctgtttgaaatagtttttgttttcagtttttgaaatatacaa 230  Q
    |||||||||||||||||||||||||| |||||||||||||||||||    
T  52742348 gagcctgtttgaaatagtttttgtttccagtttttgaaatatacaa 52742393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 201 - 243
Target Start/End: Complemental strand, 16353566 - 16353524
Alignment:
Q  201 gtttttgttttcagtttttgaaatatacaagtcttcttctcac 243  Q
    ||||||||||||||||||||||||||||||||| |||| ||||    
T  16353566 gtttttgttttcagtttttgaaatatacaagtcctcttttcac 16353524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 203 - 243
Target Start/End: Complemental strand, 3618415 - 3618375
Alignment:
Q  203 ttttgttttcagtttttgaaatatacaagtcttcttctcac 243  Q
    ||||||||||||||| |||||||||||||| ||||||||||    
T  3618415 ttttgttttcagtttctgaaatatacaagttttcttctcac 3618375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 192 - 240
Target Start/End: Complemental strand, 48944191 - 48944143
Alignment:
Q  192 tttgaaatagtttttgttttcagtttttgaaatatacaagtcttcttct 240  Q
    ||||||||||||||| |||| || |||||||||||||||||| ||||||    
T  48944191 tttgaaatagtttttctttttagcttttgaaatatacaagtcctcttct 48944143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 185 - 243
Target Start/End: Original strand, 22798537 - 22798595
Alignment:
Q  185 gagcctgtttgaaatagtttttgttttcagtttttgaaatatacaagtcttcttctcac 243  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  22798537 gagcctgtttgaaatagtttttgttttcagtttttgaaatatacaagtcctcttctcac 22798595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 185 - 243
Target Start/End: Original strand, 16655974 - 16656032
Alignment:
Q  185 gagcctgtttgaaatagtttttgttttcagtttttgaaatatacaagtcttcttctcac 243  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||    
T  16655974 gagcctgtttgaaatagtttttgttttcagtttttaaaatatacaagccttcttctcac 16656032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 185 - 243
Target Start/End: Original strand, 23403594 - 23403652
Alignment:
Q  185 gagcctgtttgaaatagtttttgttttcagtttttgaaatatacaagtcttcttctcac 243  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  23403594 gagcctatttgaaatagtttttgttttcagtttttgaaatatacaagtcctcttctcac 23403652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 185 - 243
Target Start/End: Complemental strand, 30204741 - 30204683
Alignment:
Q  185 gagcctgtttgaaatagtttttgttttcagtttttgaaatatacaagtcttcttctcac 243  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  30204741 gagcctctttgaaatagtttttgttttcagtttttgaaatatacaagtcatcttctcac 30204683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 185 - 241
Target Start/End: Original strand, 4234174 - 4234230
Alignment:
Q  185 gagcctgtttgaaatagtttttgttttcagtttttgaaatatacaagtcttcttctc 241  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||| |||||||    
T  4234174 gagcctgtttaaaatagtttttgttttcagtttttgaaatatacaagtcatcttctc 4234230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 189 - 243
Target Start/End: Complemental strand, 3001466 - 3001412
Alignment:
Q  189 ctgtttgaaatagtttttgttttcagtttttgaaatatacaagtcttcttctcac 243  Q
    |||||||||||||||||| |||||||||||||||||||||||||| |||||||||    
T  3001466 ctgtttgaaatagtttttattttcagtttttgaaatatacaagtcctcttctcac 3001412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 189 - 243
Target Start/End: Complemental strand, 4623939 - 4623885
Alignment:
Q  189 ctgtttgaaatagtttttgttttcagtttttgaaatatacaagtcttcttctcac 243  Q
    ||||||||||||||||||||||||||||||||||||||| ||||| |||||||||    
T  4623939 ctgtttgaaatagtttttgttttcagtttttgaaatatataagtcatcttctcac 4623885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 185 - 238
Target Start/End: Complemental strand, 23275620 - 23275567
Alignment:
Q  185 gagcctgtttgaaatagtttttgttttcagtttttgaaatatacaagtcttctt 238  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||| ||||    
T  23275620 gagcctctttgaaatagtttttgttttcagtttttgaaatatacaagtcctctt 23275567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 185 - 243
Target Start/End: Original strand, 14842304 - 14842362
Alignment:
Q  185 gagcctgtttgaaatagtttttgttttcagtttttgaaatatacaagtcttcttctcac 243  Q
    |||| ||||||||||| |||||||||||||||||||||||||||||||| |||| ||||    
T  14842304 gagcatgtttgaaataatttttgttttcagtttttgaaatatacaagtcctcttttcac 14842362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 189 - 230
Target Start/End: Original strand, 4414226 - 4414267
Alignment:
Q  189 ctgtttgaaatagtttttgttttcagtttttgaaatatacaa 230  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  4414226 ctgtttgaaatagtttttgttttcagtttttgaaatatacaa 4414267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 180 - 243
Target Start/End: Complemental strand, 36470234 - 36470170
Alignment:
Q  180 attacgagcctgtttgaaatagtttttgtttt-cagtttttgaaatatacaagtcttcttctcac 243  Q
    |||| |||||| ||||||||| |||||||||| |||||||||||||||||||||| |||||||||    
T  36470234 attaagagcctctttgaaataatttttgtttttcagtttttgaaatatacaagtcatcttctcac 36470170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 185 - 241
Target Start/End: Original strand, 37629998 - 37630054
Alignment:
Q  185 gagcctgtttgaaatagtttttgttttcagtttttgaaatatacaagtcttcttctc 241  Q
    ||||||||||||||||||||||||||||||||||| ||||||| ||| | |||||||    
T  37629998 gagcctgtttgaaatagtttttgttttcagttttttaaatatataagccctcttctc 37630054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 189 - 240
Target Start/End: Original strand, 21567707 - 21567758
Alignment:
Q  189 ctgtttgaaatagtttttgttttcagtttttgaaatatacaagtcttcttct 240  Q
    |||||||||||||||||||||||||||||| ||||||||||| || ||||||    
T  21567707 ctgtttgaaatagtttttgttttcagttttagaaatatacaaatcctcttct 21567758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 192 - 243
Target Start/End: Original strand, 39436844 - 39436895
Alignment:
Q  192 tttgaaatagtttttgttttcagtttttgaaatatacaagtcttcttctcac 243  Q
    ||||||||| |||||||||||| ||||||||||||||||||| |||||||||    
T  39436844 tttgaaataatttttgttttcaatttttgaaatatacaagtcctcttctcac 39436895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 190 - 232
Target Start/End: Complemental strand, 45310103 - 45310061
Alignment:
Q  190 tgtttgaaatagtttttgttttcagtttttgaaatatacaagt 232  Q
    |||||||||||||||||||||||| ||||||||||||||||||    
T  45310103 tgtttgaaatagtttttgttttcaatttttgaaatatacaagt 45310061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 185 - 238
Target Start/End: Complemental strand, 29958607 - 29958554
Alignment:
Q  185 gagcctgtttgaaatagtttttgttttcagtttttgaaatatacaagtcttctt 238  Q
    |||||| ||| ||||| |||||||||||||||||||||||||||||||| ||||    
T  29958607 gagcctctttaaaataatttttgttttcagtttttgaaatatacaagtcatctt 29958554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 192 - 243
Target Start/End: Complemental strand, 36046614 - 36046564
Alignment:
Q  192 tttgaaatagtttttgttttcagtttttgaaatatacaagtcttcttctcac 243  Q
    ||||||||||||||||||| ||||||||||||||||||| ||| ||| ||||    
T  36046614 tttgaaatagtttttgttt-cagtttttgaaatatacaaatctccttttcac 36046564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 190 - 227
Target Start/End: Original strand, 41787497 - 41787534
Alignment:
Q  190 tgtttgaaatagtttttgttttcagtttttgaaatata 227  Q
    ||||| |||||||||||||||||||||||| |||||||    
T  41787497 tgtttaaaatagtttttgttttcagtttttaaaatata 41787534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 185 - 243
Target Start/End: Complemental strand, 3729426 - 3729368
Alignment:
Q  185 gagcctgtttgaaatagtttttgttttcagtttttgaaatatacaagtcttcttctcac 243  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  3729426 gagcctgtttgaaatagtttttgttttcagtttttgaaatatacaagtcctcttctcac 3729368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 185 - 243
Target Start/End: Complemental strand, 34766977 - 34766919
Alignment:
Q  185 gagcctgtttgaaatagtttttgttttcagtttttgaaatatacaagtcttcttctcac 243  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||    
T  34766977 gagcctgtttgaaatagtttttgttttcaatttttgaaatatacaagtcctcttctcac 34766919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 177 - 230
Target Start/End: Complemental strand, 9793833 - 9793780
Alignment:
Q  177 aaaattacgagcctgtttgaaatagtttttgttttcagtttttgaaatatacaa 230  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  9793833 aaaattaagagcctgtttgaaatagtttttgttttcagtttttgaaatatacaa 9793780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 190 - 243
Target Start/End: Complemental strand, 39508404 - 39508351
Alignment:
Q  190 tgtttgaaatagtttttgttttcagtttttgaaatatacaagtcttcttctcac 243  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  39508404 tgtttgaaatagtttttgttttcagtttttgaaatatacaagtctttttctcac 39508351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 189 - 243
Target Start/End: Complemental strand, 8159159 - 8159105
Alignment:
Q  189 ctgtttgaaatagtttttgttttcagtttttgaaatatacaagtcttcttctcac 243  Q
    ||||||||||||||||||||||||| ||||||||||||||||||| |||||||||    
T  8159159 ctgtttgaaatagtttttgttttcaatttttgaaatatacaagtcctcttctcac 8159105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 185 - 243
Target Start/End: Original strand, 25081763 - 25081821
Alignment:
Q  185 gagcctgtttgaaatagtttttgttttcagtttttgaaatatacaagtcttcttctcac 243  Q
    |||||||||||||||||||||||||||||| |||||||||||||||| | |||||||||    
T  25081763 gagcctgtttgaaatagtttttgttttcaggttttgaaatatacaagccatcttctcac 25081821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 185 - 243
Target Start/End: Original strand, 25139732 - 25139790
Alignment:
Q  185 gagcctgtttgaaatagtttttgttttcagtttttgaaatatacaagtcttcttctcac 243  Q
    |||||||||||||||||||||||||||||| |||||||||||||||| | |||||||||    
T  25139732 gagcctgtttgaaatagtttttgttttcaggttttgaaatatacaagccatcttctcac 25139790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 192 - 241
Target Start/End: Original strand, 21020686 - 21020735
Alignment:
Q  192 tttgaaatagtttttgttttcagtttttgaaatatacaagtcttcttctc 241  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||    
T  21020686 tttgaaatagtttttgttttcagtttttgaaatatataagtcttcttctc 21020735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 193 - 242
Target Start/End: Original strand, 21583853 - 21583902
Alignment:
Q  193 ttgaaatagtttttgttttcagtttttgaaatatacaagtcttcttctca 242  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  21583853 ttgaaatagtttttgttttcagtttttgaaatatacaagtcatcttctca 21583902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 189 - 243
Target Start/End: Original strand, 2068963 - 2069015
Alignment:
Q  189 ctgtttgaaatagtttttgttttcagtttttgaaatatacaagtcttcttctcac 243  Q
    ||||||||||||||||||||||||||||||||||||||  |||||||||||||||    
T  2068963 ctgtttgaaatagtttttgttttcagtttttgaaatat--aagtcttcttctcac 2069015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 185 - 232
Target Start/End: Original strand, 41929337 - 41929384
Alignment:
Q  185 gagcctgtttgaaatagtttttgttttcagtttttgaaatatacaagt 232  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||    
T  41929337 gagcctgtttgaaatagtttttgttttcagtttttgaaatatgcaagt 41929384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 179 - 227
Target Start/End: Original strand, 3711172 - 3711220
Alignment:
Q  179 aattacgagcctgtttgaaatagtttttgttttcagtttttgaaatata 227  Q
    ||||| |||| ||||||||||||||||||||||||||||||||||||||    
T  3711172 aattaagagcatgtttgaaatagtttttgttttcagtttttgaaatata 3711220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 191 - 230
Target Start/End: Complemental strand, 9793722 - 9793683
Alignment:
Q  191 gtttgaaatagtttttgttttcagtttttgaaatatacaa 230  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  9793722 gtttgaaatagtttttgttttcagtttttgaaatatacaa 9793683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 185 - 232
Target Start/End: Original strand, 9913798 - 9913845
Alignment:
Q  185 gagcctgtttgaaatagtttttgttttcagtttttgaaatatacaagt 232  Q
    |||| |||||||||||||||||||||| ||||||||||||||||||||    
T  9913798 gagcatgtttgaaatagtttttgtttttagtttttgaaatatacaagt 9913845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 187 - 243
Target Start/End: Original strand, 20815668 - 20815724
Alignment:
Q  187 gcctgtttgaaatagtttttgttttcagtttttgaaatatacaagtcttcttctcac 243  Q
    |||| ||| |||||||||||||||||||||||| ||||||||||||| | |||||||    
T  20815668 gcctatttaaaatagtttttgttttcagtttttaaaatatacaagtccttttctcac 20815724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 185 - 233
Target Start/End: Complemental strand, 20736251 - 20736203
Alignment:
Q  185 gagcctgtttgaaatagtttttgttttcagtttttgaaatatacaagtc 233  Q
    |||| |||||||||||||||||||||||| ||||||||| ||| |||||    
T  20736251 gagcttgtttgaaatagtttttgttttcaatttttgaaaaatataagtc 20736203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 185 - 217
Target Start/End: Complemental strand, 38451121 - 38451089
Alignment:
Q  185 gagcctgtttgaaatagtttttgttttcagttt 217  Q
    |||||||||||||||||||||||||||||||||    
T  38451121 gagcctgtttgaaatagtttttgttttcagttt 38451089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 185 - 243
Target Start/End: Complemental strand, 41998972 - 41998914
Alignment:
Q  185 gagcctgtttgaaatagtttttgttttcagtttttgaaatatacaagtcttcttctcac 243  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  41998972 gagcctgtttgaaatagtttttgttttcattttttgaaatatacaagtcttcttctcac 41998914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 186 - 238
Target Start/End: Original strand, 39001944 - 39001996
Alignment:
Q  186 agcctgtttgaaatagtttttgttttcagtttttgaaatatacaagtcttctt 238  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  39001944 agcctgtttgaaatagtttttgttttcagtttttgaaatatacaagtcctctt 39001996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 185 - 240
Target Start/End: Original strand, 1585856 - 1585911
Alignment:
Q  185 gagcctgtttgaaatagtttttgttttcagtttttgaaatatacaagtcttcttct 240  Q
    |||||||||||||||||||| |||||| ||||||||||||||||||||||||||||    
T  1585856 gagcctgtttgaaatagtttatgtttttagtttttgaaatatacaagtcttcttct 1585911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 190 - 243
Target Start/End: Original strand, 794914 - 794967
Alignment:
Q  190 tgtttgaaatagtttttgttttcagtttttgaaatatacaagtcttcttctcac 243  Q
    ||||||||||| |||||||||||||||||||||||||||| |||||||||||||    
T  794914 tgtttgaaatattttttgttttcagtttttgaaatatacaggtcttcttctcac 794967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 185 - 230
Target Start/End: Complemental strand, 6750403 - 6750358
Alignment:
Q  185 gagcctgtttgaaatagtttttgttttcagtttttgaaatatacaa 230  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  6750403 gagcctgtttgaaatagtttttgttttcagtttttgaaatatacaa 6750358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 187 - 243
Target Start/End: Complemental strand, 26654031 - 26653975
Alignment:
Q  187 gcctgtttgaaatagtttttgttttcagtttttgaaatatacaagtcttcttctcac 243  Q
    ||||||||||||||||||||||||||| ||||||||||||||| ||| |||||||||    
T  26654031 gcctgtttgaaatagtttttgttttcaatttttgaaatatacaggtcctcttctcac 26653975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 192 - 243
Target Start/End: Original strand, 18808781 - 18808832
Alignment:
Q  192 tttgaaatagtttttgttttcagtttttgaaatatacaagtcttcttctcac 243  Q
    ||||||||| |||||||||||||||| |||||||||||||||||||||||||    
T  18808781 tttgaaataatttttgttttcagtttatgaaatatacaagtcttcttctcac 18808832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 188 - 233
Target Start/End: Original strand, 3695405 - 3695450
Alignment:
Q  188 cctgtttgaaatagtttttgttttcagtttttgaaatatacaagtc 233  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||    
T  3695405 cctgtttgaaatagtttttgttttcggtttttgaaatatacaagtc 3695450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 186 - 243
Target Start/End: Complemental strand, 4792660 - 4792603
Alignment:
Q  186 agcctgtttgaaatagtttttgttttcagtttttgaaatatacaagtcttcttctcac 243  Q
    ||||||||| |||||||||||||||| ||||||||||||||||||||  |||||||||    
T  4792660 agcctgtttaaaatagtttttgtttttagtttttgaaatatacaagttctcttctcac 4792603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 186 - 239
Target Start/End: Original strand, 11121854 - 11121907
Alignment:
Q  186 agcctgtttgaaatagtttttgttttcagtttttgaaatatacaagtcttcttc 239  Q
    |||||||||  ||||||||||||||||||||||||||||||||||||| |||||    
T  11121854 agcctgtttataatagtttttgttttcagtttttgaaatatacaagtcatcttc 11121907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 187 - 242
Target Start/End: Original strand, 571645 - 571700
Alignment:
Q  187 gcctgtttgaaatagtttttgttttcagtttttgaaatatacaagtcttcttctca 242  Q
    |||| |||||||||||||||||||||||||||||||||||| | ||| ||||||||    
T  571645 gcctctttgaaatagtttttgttttcagtttttgaaatatatacgtcctcttctca 571700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 185 - 243
Target Start/End: Complemental strand, 24909601 - 24909543
Alignment:
Q  185 gagcctgtttgaaatagtttttgttttcagtttttgaaatatacaagtcttcttctcac 243  Q
    |||||||||||||||||||||| |||||||||||| |||||||| |||  |||||||||    
T  24909601 gagcctgtttgaaatagtttttattttcagtttttaaaatatactagttctcttctcac 24909543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 190 - 239
Target Start/End: Complemental strand, 9224912 - 9224863
Alignment:
Q  190 tgtttgaaatagtttttgttttcagtttttgaaatatacaagtcttcttc 239  Q
    |||||||||||||||||||||||||||||||||||| |||| | ||||||    
T  9224912 tgtttgaaatagtttttgttttcagtttttgaaatacacaaattttcttc 9224863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 185 - 232
Target Start/End: Complemental strand, 44272451 - 44272403
Alignment:
Q  185 gagcctgtttgaaatagtttttgttttcagt-ttttgaaatatacaagt 232  Q
    |||| |||||||||||||||||||||||||| |||||||||||||||||    
T  44272451 gagcttgtttgaaatagtttttgttttcagttttttgaaatatacaagt 44272403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0306 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0306
Description:

Target: scaffold0306; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 187 - 243
Target Start/End: Complemental strand, 13147 - 13091
Alignment:
Q  187 gcctgtttgaaatagtttttgttttcagtttttgaaatatacaagtcttcttctcac 243  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  13147 gcctgtttgaaatagtttttgttttcagtttttgaaatatacaagtcctcttctcac 13091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0152 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0152
Description:

Target: scaffold0152; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 187 - 243
Target Start/End: Original strand, 22180 - 22236
Alignment:
Q  187 gcctgtttgaaatagtttttgttttcagtttttgaaatatacaagtcttcttctcac 243  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  22180 gcctgtttgaaatagtttttgttttcagtttttgaaatatacaagtcctcttctcac 22236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 187 - 243
Target Start/End: Original strand, 21423363 - 21423419
Alignment:
Q  187 gcctgtttgaaatagtttttgttttcagtttttgaaatatacaagtcttcttctcac 243  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  21423363 gcctgtttgaaatagtttttgttttcagtttttgaaatatacaagtcttcatctcac 21423419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 185 - 241
Target Start/End: Complemental strand, 37140227 - 37140171
Alignment:
Q  185 gagcctgtttgaaatagtttttgttttcagtttttgaaatatacaagtcttcttctc 241  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  37140227 gagcctgtttgaaatagtttttgttttcagtttttgaaatatacaagtcctcttctc 37140171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 187 - 241
Target Start/End: Original strand, 5958964 - 5959018
Alignment:
Q  187 gcctgtttgaaatagtttttgttttcagtttttgaaatatacaagtcttcttctc 241  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  5958964 gcctgtttgaaatagtttttgttttcagtttttgaaatatacaagtcctcttctc 5959018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 185 - 243
Target Start/End: Complemental strand, 37060172 - 37060114
Alignment:
Q  185 gagcctgtttgaaatagtttttgttttcagtttttgaaatatacaagtcttcttctcac 243  Q
    |||||||||||||||||||||||||||||||||||||||||||||| || |||||||||    
T  37060172 gagcctgtttgaaatagtttttgttttcagtttttgaaatatacaaatcctcttctcac 37060114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 186 - 243
Target Start/End: Complemental strand, 24476024 - 24475967
Alignment:
Q  186 agcctgtttgaaatagtttttgttttcagtttttgaaatatacaagtcttcttctcac 243  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||    
T  24476024 agcctgtttgaaatagtttttgttttcagtttttgaaatatacaaatcttcttatcac 24475967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 185 - 243
Target Start/End: Original strand, 13274197 - 13274255
Alignment:
Q  185 gagcctgtttgaaatagtttttgttttcagtttttgaaatatacaagtcttcttctcac 243  Q
    ||||||||||||||||||||||||||| | ||||||||||||||||||| |||||||||    
T  13274197 gagcctgtttgaaatagtttttgtttttaatttttgaaatatacaagtcctcttctcac 13274255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 185 - 243
Target Start/End: Complemental strand, 30609779 - 30609721
Alignment:
Q  185 gagcctgtttgaaatagtttttgttttcagtttttgaaatatacaagtcttcttctcac 243  Q
    ||||| ||||||||| |||||||||||||||| ||||||||||||||||||||||||||    
T  30609779 gagcccgtttgaaatcgtttttgttttcagttattgaaatatacaagtcttcttctcac 30609721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 189 - 242
Target Start/End: Complemental strand, 37802925 - 37802872
Alignment:
Q  189 ctgtttgaaatagtttttgttttcagtttttgaaatatacaagtcttcttctca 242  Q
    ||||||||||||||||||||||| | ||||||||||||||||||||||||||||    
T  37802925 ctgtttgaaatagtttttgttttaaatttttgaaatatacaagtcttcttctca 37802872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 190 - 238
Target Start/End: Complemental strand, 30393680 - 30393632
Alignment:
Q  190 tgtttgaaatagtttttgttttcagtttttgaaatatacaagtcttctt 238  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||    
T  30393680 tgtttgaaatagtttttgttttcagtttttgaaatatacaagtcctctt 30393632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 188 - 243
Target Start/End: Complemental strand, 6974607 - 6974552
Alignment:
Q  188 cctgtttgaaatagtttttgttttcagtttttgaaatatacaagtcttcttctcac 243  Q
    |||||||||||||||||||||||||||||||||||||||| ||||  |||||||||    
T  6974607 cctgtttgaaatagtttttgttttcagtttttgaaatatataagtgctcttctcac 6974552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 193 - 243
Target Start/End: Complemental strand, 15070475 - 15070425
Alignment:
Q  193 ttgaaatagtttttgttttcagtttttgaaatatacaagtcttcttctcac 243  Q
    |||||||||||||||||||||||||||||||||||||| || |||||||||    
T  15070475 ttgaaatagtttttgttttcagtttttgaaatatacaaatcctcttctcac 15070425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 185 - 243
Target Start/End: Original strand, 27004445 - 27004503
Alignment:
Q  185 gagcctgtttgaaatagtttttgttttcagtttttgaaatatacaagtcttcttctcac 243  Q
    |||| |||||||||||||||||||||||| ||||||||||||| ||||| |||||||||    
T  27004445 gagcatgtttgaaatagtttttgttttcaatttttgaaatatataagtcctcttctcac 27004503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 186 - 243
Target Start/End: Complemental strand, 28107580 - 28107523
Alignment:
Q  186 agcctgtttgaaatagtttttgttttcagtttttgaaatatacaagtcttcttctcac 243  Q
    ||||||||||||| | ||||||||||||||||||||||||||||| || |||||||||    
T  28107580 agcctgtttgaaacaatttttgttttcagtttttgaaatatacaaatcctcttctcac 28107523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 195 - 243
Target Start/End: Original strand, 4382213 - 4382261
Alignment:
Q  195 gaaatagtttttgttttcagtttttgaaatatacaagtcttcttctcac 243  Q
    ||||||||||||||||||||||||||||||||||||||  |||||||||    
T  4382213 gaaatagtttttgttttcagtttttgaaatatacaagttctcttctcac 4382261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 190 - 232
Target Start/End: Complemental strand, 10217443 - 10217401
Alignment:
Q  190 tgtttgaaatagtttttgttttcagtttttgaaatatacaagt 232  Q
    ||||||||||||||||| |||||||||||||||||||||||||    
T  10217443 tgtttgaaatagtttttattttcagtttttgaaatatacaagt 10217401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 198 - 243
Target Start/End: Complemental strand, 27404695 - 27404650
Alignment:
Q  198 atagtttttgttttcagtttttgaaatatacaagtcttcttctcac 243  Q
    |||||||||||||| ||||||||||||||||||||| |||||||||    
T  27404695 atagtttttgtttttagtttttgaaatatacaagtcctcttctcac 27404650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 190 - 233
Target Start/End: Complemental strand, 22194371 - 22194328
Alignment:
Q  190 tgtttgaaatagtttttgttttcagtttttgaaatatacaagtc 233  Q
    ||||||||||||||||||||||  ||||||||||||||||||||    
T  22194371 tgtttgaaatagtttttgtttttggtttttgaaatatacaagtc 22194328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 185 - 230
Target Start/End: Complemental strand, 5807412 - 5807368
Alignment:
Q  185 gagcctgtttgaaatagtttttgttttcagtttttgaaatatacaa 230  Q
    |||| ||||||||||||||||||||| |||||||||||||||||||    
T  5807412 gagcatgtttgaaatagtttttgttt-cagtttttgaaatatacaa 5807368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 195 - 243
Target Start/End: Complemental strand, 43022964 - 43022916
Alignment:
Q  195 gaaatagtttttgttttcagtttttgaaatatacaagtcttcttctcac 243  Q
    |||||| |||||||||| ||||||| ||||||||||||| |||||||||    
T  43022964 gaaataatttttgtttttagtttttaaaatatacaagtcctcttctcac 43022916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 2e-20; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 185 - 243
Target Start/End: Original strand, 35929703 - 35929761
Alignment:
Q  185 gagcctgtttgaaatagtttttgttttcagtttttgaaatatacaagtcttcttctcac 243  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||    
T  35929703 gagcctgtttgaaatagtttttgttttcagtttttgaaatatataagtcctcttctcac 35929761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 191 - 240
Target Start/End: Original strand, 12701040 - 12701089
Alignment:
Q  191 gtttgaaatagtttttgttttcagtttttgaaatatacaagtcttcttct 240  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12701040 gtttgaaatagtttttgttttcagtttttgaaatatacaagtcttcttct 12701089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 185 - 242
Target Start/End: Complemental strand, 53584659 - 53584602
Alignment:
Q  185 gagcctgtttgaaatagtttttgttttcagtttttgaaatatacaagtcttcttctca 242  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  53584659 gagcatgtttgaaatagtttttgttttcagtttttgaaatatacaagtcatcttctca 53584602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 191 - 243
Target Start/End: Original strand, 21555382 - 21555434
Alignment:
Q  191 gtttgaaatagtttttgttttcagtttttgaaatatacaagtcttcttctcac 243  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  21555382 gtttgaaatagtttttgttttcagtttttgaaatatataagtcttcttctcac 21555434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 190 - 241
Target Start/End: Complemental strand, 56100226 - 56100175
Alignment:
Q  190 tgtttgaaatagtttttgttttcagtttttgaaatatacaagtcttcttctc 241  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  56100226 tgtttgaaatagtttttgttttcagtttttgaaatatacaagtcctcttctc 56100175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 186 - 243
Target Start/End: Complemental strand, 36609506 - 36609448
Alignment:
Q  186 agcctgtttgaaatagtttttgtttt-cagtttttgaaatatacaagtcttcttctcac 243  Q
    |||||||||||||||||||||||||| ||||||||||||||||||| || |||||||||    
T  36609506 agcctgtttgaaatagtttttgtttttcagtttttgaaatatacaaatcctcttctcac 36609448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 189 - 242
Target Start/End: Original strand, 19598367 - 19598420
Alignment:
Q  189 ctgtttgaaatagtttttgttttcagtttttgaaatatacaagtcttcttctca 242  Q
    |||||||||||||||||||||||||||||| |||||||||||||| | ||||||    
T  19598367 ctgtttgaaatagtttttgttttcagttttcgaaatatacaagtcattttctca 19598420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 185 - 240
Target Start/End: Complemental strand, 44243789 - 44243734
Alignment:
Q  185 gagcctgtttgaaatagtttttgttttcagtttttgaaatatacaagtcttcttct 240  Q
    ||||||||||||||||  ||||||||| ||||||||||||||||||||| ||||||    
T  44243789 gagcctgtttgaaataaattttgtttttagtttttgaaatatacaagtcatcttct 44243734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 185 - 243
Target Start/End: Original strand, 23249466 - 23249524
Alignment:
Q  185 gagcctgtttgaaatagtttttgttttcagtttttgaaatatacaagtcttcttctcac 243  Q
    |||||||||||||| | ||||||||||| |||||||||||||||||| | |||||||||    
T  23249466 gagcctgtttgaaacaatttttgttttcggtttttgaaatatacaagccctcttctcac 23249524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 189 - 242
Target Start/End: Original strand, 35749385 - 35749438
Alignment:
Q  189 ctgtttgaaatagtttttgttttcagtttttgaaatatacaagtcttcttctca 242  Q
    |||||||||||| ||||| |||||| ||||||||||||||||||| ||||||||    
T  35749385 ctgtttgaaataatttttattttcaatttttgaaatatacaagtcatcttctca 35749438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 190 - 243
Target Start/End: Original strand, 41842789 - 41842842
Alignment:
Q  190 tgtttgaaatagtttttgttttcagtttttgaaatatacaagtcttcttctcac 243  Q
    ||||||||||||||||||||||| ||||||||||||||||| || | |||||||    
T  41842789 tgtttgaaatagtttttgttttcggtttttgaaatatacaaatccttttctcac 41842842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 200 - 243
Target Start/End: Original strand, 827840 - 827883
Alignment:
Q  200 agtttttgttttcagtttttgaaatatacaagtcttcttctcac 243  Q
    ||||||||||||| |||||||||||||||||||| |||||||||    
T  827840 agtttttgttttcggtttttgaaatatacaagtcctcttctcac 827883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0532 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0532
Description:

Target: scaffold0532; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 190 - 242
Target Start/End: Original strand, 11320 - 11372
Alignment:
Q  190 tgtttgaaatagtttttgttttcagtttttgaaatatacaagtcttcttctca 242  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  11320 tgtttgaaatagtttttgttttcagtttttgaaatatacaagtcctcttctca 11372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 192 - 243
Target Start/End: Complemental strand, 2814976 - 2814925
Alignment:
Q  192 tttgaaatagtttttgttttcagtttttgaaatatacaagtcttcttctcac 243  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  2814976 tttgaaatagtttttgttttcagtttttgaaatatacaagtcctcttctcac 2814925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 185 - 243
Target Start/End: Original strand, 1067796 - 1067854
Alignment:
Q  185 gagcctgtttgaaatagtttttgttttcagtttttgaaatatacaagtcttcttctcac 243  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||  |||||||||    
T  1067796 gagcttgtttgaaatagtttttgttttcagtttttgaaatatacaagttctcttctcac 1067854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 190 - 243
Target Start/End: Original strand, 444522 - 444575
Alignment:
Q  190 tgtttgaaatagtttttgttttcagtttttgaaatatacaagtcttcttctcac 243  Q
    ||||| |||||||||||||||||||||||||||||||||||||| |||||||||    
T  444522 tgtttaaaatagtttttgttttcagtttttgaaatatacaagtcctcttctcac 444575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 185 - 242
Target Start/End: Complemental strand, 24640445 - 24640388
Alignment:
Q  185 gagcctgtttgaaatagtttttgttttcagtttttgaaatatacaagtcttcttctca 242  Q
    |||||| ||||||||||||||||||||||||||||||||||| |||||| ||||||||    
T  24640445 gagcctctttgaaatagtttttgttttcagtttttgaaatatgcaagtcctcttctca 24640388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 185 - 241
Target Start/End: Complemental strand, 26394082 - 26394026
Alignment:
Q  185 gagcctgtttgaaatagtttttgttttcagtttttgaaatatacaagtcttcttctc 241  Q
    |||||| |||||||||||||||||||||||||||||||||||| || ||||||||||    
T  26394082 gagcctctttgaaatagtttttgttttcagtttttgaaatataaaaatcttcttctc 26394026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 185 - 243
Target Start/End: Complemental strand, 6200255 - 6200197
Alignment:
Q  185 gagcctgtttgaaatagtttttgttttcagtttttgaaatatacaagtcttcttctcac 243  Q
    |||||||||||||||| ||||||||||||||||||||||||||||| |  |||||||||    
T  6200255 gagcctgtttgaaatattttttgttttcagtttttgaaatatacaaattctcttctcac 6200197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 185 - 231
Target Start/End: Original strand, 12324168 - 12324214
Alignment:
Q  185 gagcctgtttgaaatagtttttgttttcagtttttgaaatatacaag 231  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||    
T  12324168 gagcctgtttgaagtagtttttgttttcagtttttgaaatatacaag 12324214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 189 - 242
Target Start/End: Original strand, 23774069 - 23774122
Alignment:
Q  189 ctgtttgaaatagtttttgttttcagtttttgaaatatacaagtcttcttctca 242  Q
    |||||||||||||||||| |||| | ||||||||||||||||||  ||||||||    
T  23774069 ctgtttgaaatagtttttatttttaatttttgaaatatacaagttctcttctca 23774122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0302 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0302
Description:

Target: scaffold0302; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 185 - 243
Target Start/End: Complemental strand, 18596 - 18538
Alignment:
Q  185 gagcctgtttgaaatagtttttgttttcagtttttgaaatatacaagtcttcttctcac 243  Q
    ||||||||||||||||||||||| ||| ||||||||||||||||||||| |||||||||    
T  18596 gagcctgtttgaaatagtttttggttttagtttttgaaatatacaagtcatcttctcac 18538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 185 - 240
Target Start/End: Original strand, 67868 - 67923
Alignment:
Q  185 gagcctgtttgaaatagtttttgttttcagtttttgaaatatacaagtcttcttct 240  Q
    |||||||||||||||| |||||||||||||||||| ||||||||||||| ||||||    
T  67868 gagcctgtttgaaataatttttgttttcagtttttaaaatatacaagtcctcttct 67923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 176 - 243
Target Start/End: Original strand, 41326028 - 41326095
Alignment:
Q  176 taaaattacgagcctgtttgaaatagtttttgttttcagtttttgaaatatacaagtcttcttctcac 243  Q
    |||||||  |||| |||||||||||||||||||||| ||||||||||||||| || ||||||||||||    
T  41326028 taaaattgtgagcatgtttgaaatagtttttgttttgagtttttgaaatatataaatcttcttctcac 41326095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 189 - 243
Target Start/End: Complemental strand, 8163732 - 8163678
Alignment:
Q  189 ctgtttgaaatagtttttgttttcagtttttgaaatatacaagtcttcttctcac 243  Q
    |||||||||||||||||||||||| |||||||||||||||||||  |||||||||    
T  8163732 ctgtttgaaatagtttttgttttctgtttttgaaatatacaagttctcttctcac 8163678  T

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Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 189 - 243
Target Start/End: Complemental strand, 40337155 - 40337101
Alignment:
Q  189 ctgtttgaaatagtttttgttttcagtttttgaaatatacaagtcttcttctcac 243  Q
    |||||||||||||||||||||||||||||| ||||||| |||||| |||||||||    
T  40337155 ctgtttgaaatagtttttgttttcagttttcgaaatatgcaagtcatcttctcac 40337101  T

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Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 189 - 243
Target Start/End: Complemental strand, 2362471 - 2362417
Alignment:
Q  189 ctgtttgaaatagtttttgttttcagtttttgaaatatacaagtcttcttctcac 243  Q
    |||||||||| | |||||||||||||||||| |||||||||| ||||||||||||    
T  2362471 ctgtttgaaacaatttttgttttcagtttttaaaatatacaaatcttcttctcac 2362417  T

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Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 191 - 238
Target Start/End: Complemental strand, 35589494 - 35589447
Alignment:
Q  191 gtttgaaatagtttttgttttcagtttttgaaatatacaagtcttctt 238  Q
    ||||||||||||||||||||||  ||||||||||||||||||| ||||    
T  35589494 gtttgaaatagtttttgttttcgatttttgaaatatacaagtcctctt 35589447  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 190 - 227
Target Start/End: Original strand, 31637707 - 31637744
Alignment:
Q  190 tgtttgaaatagtttttgttttcagtttttgaaatata 227  Q
    |||||||||||| ||||||||||||||||| |||||||    
T  31637707 tgtttgaaatagcttttgttttcagtttttaaaatata 31637744  T

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Target: scaffold1248 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold1248
Description:

Target: scaffold1248; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 191 - 241
Target Start/End: Original strand, 970 - 1020
Alignment:
Q  191 gtttgaaatagtttttgttttcagtttttgaaatatacaagtcttcttctc 241  Q
    ||||||||||||||||||||||||||||| ||||||||||||||| |||||    
T  970 gtttgaaatagtttttgttttcagtttttaaaatatacaagtctttttctc 1020  T

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Target: scaffold0952 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0952
Description:

Target: scaffold0952; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 191 - 241
Target Start/End: Complemental strand, 1343 - 1293
Alignment:
Q  191 gtttgaaatagtttttgttttcagtttttgaaatatacaagtcttcttctc 241  Q
    ||||||||||||||||||||||||||||| ||||||||||||||| |||||    
T  1343 gtttgaaatagtttttgttttcagtttttaaaatatacaagtctttttctc 1293  T

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Target: scaffold0140 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 186 - 243
Target Start/End: Original strand, 21473 - 21530
Alignment:
Q  186 agcctgtttgaaatagtttttgttttcagtttttgaaatatacaagtcttcttctcac 243  Q
    ||||||||||||| |||||||||||||||||||||||||||| || || |||||||||    
T  21473 agcctgtttgaaacagtttttgttttcagtttttgaaatatataaatcatcttctcac 21530  T

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Target: scaffold0121 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 186 - 241
Target Start/End: Complemental strand, 37495 - 37440
Alignment:
Q  186 agcctgtttgaaatagtttttgttttcagtttttgaaatatacaagtcttcttctc 241  Q
    ||||| ||||||||||| ||||||||| |||||||||||||||||||| |||||||    
T  37495 agcctatttgaaatagtgtttgttttcggtttttgaaatatacaagtcctcttctc 37440  T

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