View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4081_low_38 (Length: 248)
Name: NF4081_low_38
Description: NF4081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4081_low_38 |
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Alignment Details
Target: chr2 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 37859691 - 37859926
Alignment:
| Q |
1 |
cattggtaatcaccgttggaattcctaatcaaaccaccaaatgctgccatacctggattggtttgggagcgagagcgaccatcgaaattgaaaacataag |
100 |
Q |
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|||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37859691 |
catttgtaatcaccgttggaattcctaatcaaaccaccac--gctgccatacctggattggtttgggagcgagagcgaccatcgaaattgaaaacataag |
37859788 |
T |
|
| Q |
101 |
cattagttgcatcttccttccaagcaattagcctagttttcttgtttaatatctcgagtgataagcgtaaattttttacactaaagccatgagagggaag |
200 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37859789 |
cattagttgcatcttccttccaagcaattagccgagttttcttttttaatatcttgagtgataagcgtaaattttttacactaaagccatgagagggaag |
37859888 |
T |
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| Q |
201 |
caattttcgttgctttatttcttctttcattttttcat |
238 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
37859889 |
caattttcgttgctttatttcttctttcattttttcat |
37859926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 18102083 - 18102317
Alignment:
| Q |
1 |
cattggtaatcaccgttggaattcctaatcaaaccaccaaatgctgccatacctggattggtttgggagcgagagcgaccatcgaaattgaaaacataag |
100 |
Q |
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|||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18102083 |
catttgtaatcaccgttggaattcctaatcaaaccaccac--gctgccatacctggattggtttgggagcgagagcgaccatcgaaattgaaaacataag |
18102180 |
T |
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| Q |
101 |
cattagttgcatcttccttccaagcaattagcctagttttcttgtttaatatctcgagtgataagcgtaaattttttacactaaagccatgagagggaag |
200 |
Q |
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||||||||||||||||||||||||||||||||| || |||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18102181 |
cattagttgcatcttccttccaagcaattagccgag-tttcttttttaatatcttgagtgataagcgtaaattttttacactaaagccatgagagggaag |
18102279 |
T |
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| Q |
201 |
caattttcgttgctttatttcttctttcattttttcat |
238 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
18102280 |
caattttcgttgctttatttcttctttcattttttcat |
18102317 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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