View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4081_low_4 (Length: 553)
Name: NF4081_low_4
Description: NF4081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4081_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 522; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 522; E-Value: 0
Query Start/End: Original strand, 5 - 538
Target Start/End: Complemental strand, 43927657 - 43927124
Alignment:
| Q |
5 |
caaagctttggatctgatagtgattggtctttaactgattcagaatttagccatattagtggagaacaaatgaggaagatggagatagtgaaagaggaaa |
104 |
Q |
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| T |
43927657 |
caaagctttggatctgatagtgattggtctttaactgattcagaatttagccatattagtggagaacaaatgaggaagttggagatagtgaaagaggaaa |
43927558 |
T |
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| Q |
105 |
tggtgaaaaaggtagtcagggactctagcagtgaaacaccatcaatatcaagagctaagggaaaaaatcctccttcaaaacctcctgttgaaaggaagaa |
204 |
Q |
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| T |
43927557 |
tggtgaaaaaggtagtcagggactctagcagtgaaacaccatcaatatcaagagctaagggaaaaaatcctcctgcaaaacctcctgttgaaaggaagaa |
43927458 |
T |
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| Q |
205 |
tggaaacaatcctttgagaaaacaaagtacaacagttactaatcgtgcggtaaaacctaagattgcttctattggaagatcaaggtcacaaagtcgagtc |
304 |
Q |
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| T |
43927457 |
tggaaacaatcctttgagaaaacaaagtacaacagttactaatcgtgcggtaaaacctaagattgcttctattggaagatcaaggtcacaaagtcgagtc |
43927358 |
T |
|
| Q |
305 |
gacgattctaaggaatcaacatttgataatcctgagcttggaccatttttactaaagaaagcaagggatttgatttcgttaggagagaacccgaggaaag |
404 |
Q |
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| T |
43927357 |
gacgattctaaggaatcaacatttgataatcctgagcttggaccatttttactaaagaaagcaagggatttgatttcgttaggagagaacccgaggaaag |
43927258 |
T |
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| Q |
405 |
ctctcgagttatcgcttcaagcgacgaaattgtttgagaaatctgcgaatgggaaaccgagtttggatctggttatgtgtttacatgttactgcagcaat |
504 |
Q |
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| T |
43927257 |
ctctcgagttatcacttcaagcgacgaaattgtttgagaaatctgcgaatgggaaaccgagtttggatctggttatgtgtttacatgttactgcagcaat |
43927158 |
T |
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| Q |
505 |
atattgcagtttgggtcattataatgaggcaatt |
538 |
Q |
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| T |
43927157 |
atattgcagtttgggtcattataatgaggcaatt |
43927124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 58; Significance: 4e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 401 - 538
Target Start/End: Complemental strand, 35116241 - 35116104
Alignment:
| Q |
401 |
aaagctctcgagttatcgcttcaagcgacgaaattgtttgagaaatctgcgaatgggaaaccgagtttggatctggttatgtgtttacatgttactgcag |
500 |
Q |
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|||||||| ||||| | |||||||| | |||| |||||||||| | || |||||||| ||||||||||| ||||||||||||||||||||||| |||| |
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| T |
35116241 |
aaagctcttgagttggctcttcaagcaatgaaactgtttgagaagtttggcaatgggaagccgagtttggaactggttatgtgtttacatgttaccgcag |
35116142 |
T |
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| Q |
501 |
caatatattgcagtttgggtcattataatgaggcaatt |
538 |
Q |
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| T |
35116141 |
caatatattgcagcctgggtcgatatagcgaggcaatt |
35116104 |
T |
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Back To:
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