View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4081_low_40 (Length: 244)
Name: NF4081_low_40
Description: NF4081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4081_low_40 |
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| [»] chr7 (5 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 232; Significance: 1e-128; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 4290032 - 4289789
Alignment:
| Q |
1 |
accatagctgaatctcatgatgatttcaatcatttatctggtaagaatctttctgaagctacacaaattcatgatcttttacctaacttgaatatttctc |
100 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4290032 |
accatagctgaatctcatgctgatttcaatcatttatctggtaagaatctttctgaagctacacaaattcatgatcttttacctaacttgaatatttctc |
4289933 |
T |
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| Q |
101 |
atgatcaagcttctgttttggctcttcaagttaccgtatttccaaactatggattttcaattggtattacttcacatcatgctgttttagatggtaaaac |
200 |
Q |
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||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4289932 |
atgatcaagcttctgttttggctcttcaagttaccatttttccaaactatggattttcaattggtattacttcacatcatgctgttttagatggtaaaac |
4289833 |
T |
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| Q |
201 |
ttcaacttcttttatcaaatcttgggcttacctatgtagaaagc |
244 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4289832 |
ttcaacttcttttatcaaatcttgggcttacctatgtagaaagc |
4289789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 4298616 - 4298375
Alignment:
| Q |
1 |
accatagctgaatctcatgatgatttcaatcatttatctggtaagaatctttctgaagctacacaaattcatgatcttttacctaacttgaatatttctc |
100 |
Q |
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||||||||||||||| || |||||||||| || ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4298616 |
accatagctgaatctgattctgatttcaattatctatctggtaagaatccttctgaagctacacaaattcatgatcttttacctaacttgaatatttctc |
4298517 |
T |
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| Q |
101 |
atgatcaagcttctgttttggctcttcaagttaccgtatttccaaactatggattttcaattggtattacttcacatcatgctgttttagatggtaaaac |
200 |
Q |
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|||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4298516 |
atgatcaagcttatgttttggctcttcaagttaccgtttttccaaactatggattttcaattggtattacttcacatcatgctgttttagatggtaaaac |
4298417 |
T |
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| Q |
201 |
ttcaacttcttttatcaaatcttgggcttacctatgtagaaa |
242 |
Q |
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| T |
4298416 |
ttcaacttcttttatcaaatcttgggcttacctatgtagaaa |
4298375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 5 - 244
Target Start/End: Original strand, 4260149 - 4260388
Alignment:
| Q |
5 |
tagctgaatctcatgatgatttcaatcatttatctggtaagaatctttctgaagctacacaaattcatgatcttttacctaacttgaatatttctcatga |
104 |
Q |
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||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| |
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| T |
4260149 |
tagctgaatctcatgctgatttcaatcatttctctggtaagaatctttctgaagctacacagattcatgattttttacctaacttgaatatttctcatga |
4260248 |
T |
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| Q |
105 |
tcaagcttctgttttggctcttcaagttaccgtatttccaaactatggattttcaattggtattacttcacatcatgctgttttagatggtaaaacttca |
204 |
Q |
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|||||||||| ||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4260249 |
tcaagcttcttttttggctcttcaagttactttttttccaaactatggattttcaattggtattacttcacatcatgctgttttagatggtaaaacttca |
4260348 |
T |
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| Q |
205 |
acttcttttatcaaatcttgggcttacctatgtagaaagc |
244 |
Q |
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| T |
4260349 |
acttcttttatcaaatcttgggcttacctatgtagaaagc |
4260388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 4265691 - 4265934
Alignment:
| Q |
1 |
accatagctgaatctcatgatgatttcaatcatttatctggtaagaatctttctgaagctacacaaattcatgatcttttacctaacttgaatatttctc |
100 |
Q |
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||||||||||||||| ||| ||||||||||||| | || |||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
4265691 |
accatagctgaatctgatgctgatttcaatcatctttcaggtaagaatcttactgaagctaaacaaattcatgatcttttacctaacttgaatatttctc |
4265790 |
T |
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| Q |
101 |
atgatcaagcttctgttttggctcttcaagttaccgtatttccaaactatggattttcaattggtattacttcacatcatgctgttttagatggtaaaac |
200 |
Q |
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|||||||||||||| ||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4265791 |
atgatcaagcttctattttggctcttcaagttactctttttccaaactatggattttcaattggtattacttcacatcatgctgttttagatggtaaaac |
4265890 |
T |
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| Q |
201 |
ttcaacttcttttatcaaatcttgggcttacctatgtagaaagc |
244 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4265891 |
ttcaacttcttttatcaaatcttgggcttacctatgtagaaagc |
4265934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 10 - 194
Target Start/End: Complemental strand, 4285293 - 4285109
Alignment:
| Q |
10 |
gaatctcatgatgatttcaatcatttatctggtaagaatctttctgaagctacacaaattcatgatcttttacctaacttgaatatttctcatgatcaag |
109 |
Q |
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|||||||||| || ||||||||||||||||| |||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
4285293 |
gaatctcatgctgctttcaatcatttatctgctaagaatctttcagaagccacacaaattcatgatcttttacctaacttgaatatttcacatgatcaag |
4285194 |
T |
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| Q |
110 |
cttctgttttggctcttcaagttaccgtatttccaaactatggattttcaattggtattacttcacatcatgctgttttagatgg |
194 |
Q |
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|| |||||||||||||||||||||| || ||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |
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| T |
4285193 |
ctactgttttggctcttcaagttactgtttttccaaactatggattttcaatgggcattacttcacatcatgctgttttagatgg |
4285109 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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