View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4081_low_41 (Length: 240)

Name: NF4081_low_41
Description: NF4081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4081_low_41
NF4081_low_41
[»] chr6 (19 HSPs)
chr6 (1-229)||(4564313-4564541)
chr6 (1-229)||(4592833-4593061)
chr6 (1-170)||(4617624-4617793)
chr6 (1-171)||(4602391-4602561)
chr6 (1-141)||(4299214-4299351)
chr6 (1-141)||(4259547-4259684)
chr6 (1-141)||(4266559-4266696)
chr6 (1-142)||(4514513-4514651)
chr6 (43-141)||(4586277-4586375)
chr6 (1-160)||(4568646-4568802)
chr6 (2-141)||(4458198-4458334)
chr6 (1-142)||(4598773-4598911)
chr6 (1-142)||(4622742-4622880)
chr6 (1-141)||(4516923-4517060)
chr6 (1-84)||(4256074-4256154)
chr6 (43-142)||(4561145-4561244)
chr6 (43-142)||(4574949-4575048)
chr6 (44-141)||(4481335-4481432)
chr6 (43-104)||(4506498-4506559)
[»] scaffold0199 (1 HSPs)
scaffold0199 (1-226)||(65-291)
[»] chr8 (2 HSPs)
chr8 (1-226)||(1674828-1675054)
chr8 (72-160)||(20863217-20863305)
[»] chr3 (1 HSPs)
chr3 (1-171)||(1281716-1281886)
[»] chr5 (2 HSPs)
chr5 (1-141)||(24103601-24103738)
chr5 (52-141)||(24107025-24107114)
[»] scaffold0477 (1 HSPs)
scaffold0477 (1-141)||(4082-4216)
[»] chr7 (1 HSPs)
chr7 (1-141)||(3087022-3087159)


Alignment Details
Target: chr6 (Bit Score: 213; Significance: 1e-117; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 4564313 - 4564541
Alignment:
Q  1 cttctttccaaaggttggaacctaaagaatccaattgatgaatttgtggagtttggtttaataatgaaggtaaagggccaatggggtaaagagaaggaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4564313 cttctttccaaaggttggaacctaaagaatccaattgatgaatttgtggagtttggtttaataatgaaggtaaagggccaatggggtaaagagaaggaaa 4564412  T
Q  101 catagaggagagagcatttattacatcactctcaagttcattgaatgtattcaaaacaattgtagagtctccaggaactttatcagccgcatcaattaca 200  Q
    |||||||||||||||||||||||||||||||| |||||||| ||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  4564413 catagaggagagagcatttattacatcactctaaagttcatggaaagtattcaaaacaattgtagagtctccaagaactttatcagccgcatcaattaca 4564512  T
Q  201 aagtctaacataatatcatttggatctgt 229  Q
    |||||||||||||||||||||||||||||    
T  4564513 aagtctaacataatatcatttggatctgt 4564541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 4592833 - 4593061
Alignment:
Q  1 cttctttccaaaggttggaacctaaagaatccaattgatgaatttgtggagtttggtttaataatgaaggtaaagggccaatggggtaaagagaaggaaa 100  Q
    |||||||||| | ||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4592833 cttctttccatatgttggaaccaaaagaatccaattgatggatttgtggagtttggtttaataatgaaggtaaagggccaatggggtaaagagaaggaaa 4592932  T
Q  101 catagaggagagagcatttattacatcactctcaagttcattgaatgtattcaaaacaattgtagagtctccaggaactttatcagccgcatcaattaca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| ||||||| |  | || ||||||||||| |||||||||||    
T  4592933 catagaggagagagcatttattacatcactctcaagttcattgaaagtattcaaaataatagtagagtttttatgatctttatcagccacatcaattaca 4593032  T
Q  201 aagtctaacataatatcatttggatctgt 229  Q
    |||| ||||||||||||||||||||||||    
T  4593033 aagtttaacataatatcatttggatctgt 4593061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 1 - 170
Target Start/End: Original strand, 4617624 - 4617793
Alignment:
Q  1 cttctttccaaaggttggaacctaaagaatccaattgatgaatttgtggagtttggtttaataatgaaggtaaagggccaatggggtaaagagaaggaaa 100  Q
    |||||||||||||||||||| ||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| || |||| ||||||||     
T  4617624 cttctttccaaaggttggaatctaaagagtccaattgatgaatttgtggagtttgttttaataatgaaggtaaagggccaatcggataaatagaaggaat 4617723  T
Q  101 catagaggagagagcatttattacatcactctcaagttcattgaatgtattcaaaacaattgtagagtct 170  Q
      | ||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| |||| ||||    
T  4617724 tgtggaggagagagcatttattacatcactctcaagttcattgaaagtattcaaaagaatagtagtgtct 4617793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 171
Target Start/End: Original strand, 4602391 - 4602561
Alignment:
Q  1 cttctttccaaaggttggaacctaaagaatccaattgatgaatttgtggagtttggtttaataatgaaggtaaagggccaatggggtaaagagaaggaaa 100  Q
    |||||||||| ||||||||||||||| | |||||||||||||||||||||||||| |||||||||||| | ||||| || || |  || | |||||| ||    
T  4602391 cttctttccagaggttggaacctaaacagtccaattgatgaatttgtggagtttgatttaataatgaatgcaaaggtccgatagtatataaagaagggaa 4602490  T
Q  101 catagaggagagagcatttattacatcactctcaagttcattgaatgtattcaaaacaattgtagagtctc 171  Q
    ||||||  | || ||||| |||||||||||||||||||||||| | |||||||||| ||| ||||||||||    
T  4602491 catagaatatagtgcattcattacatcactctcaagttcattgtaagtattcaaaagaatagtagagtctc 4602561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 4299351 - 4299214
Alignment:
Q  1 cttctttccaaaggttggaacctaaagaatccaattgatgaatttgtggagtttggtttaataatgaaggtaaagggccaatggggtaaagagaaggaaa 100  Q
    ||||||||||||| |||||||||||||| ||||| |||| |   ||||||||||| |||||||||||||||||||| ||||| |  || | |||||| ||    
T  4299351 cttctttccaaagattggaacctaaagattccaagtgatta---tgtggagtttgatttaataatgaaggtaaaggtccaatagtatataaagaagggaa 4299255  T
Q  101 catagaggagagagcatttattacatcactctcaagttcat 141  Q
    ||||||  |||||||||| ||||||||||||||||||||||    
T  4299254 catagaatagagagcattcattacatcactctcaagttcat 4299214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 4259684 - 4259547
Alignment:
Q  1 cttctttccaaaggttggaacctaaagaatccaattgatgaatttgtggagtttggtttaataatgaaggtaaagggccaatggggtaaagagaaggaaa 100  Q
    ||||||||||||| ||||||||||| ||  |||  |||| |   ||||||||||| |||||||||||||||||||| ||||| |  || | |||||| ||    
T  4259684 cttctttccaaagattggaacctaacgatgccaggtgatta---tgtggagtttgatttaataatgaaggtaaaggtccaatagcatataaagaagggaa 4259588  T
Q  101 catagaggagagagcatttattacatcactctcaagttcat 141  Q
    ||||||  ||||  |||| ||||||||||||||||||||||    
T  4259587 catagaatagagcacattcattacatcactctcaagttcat 4259547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 4266696 - 4266559
Alignment:
Q  1 cttctttccaaaggttggaacctaaagaatccaattgatgaatttgtggagtttggtttaataatgaaggtaaagggccaatggggtaaagagaaggaaa 100  Q
    ||||||||||||| ||||||  ||||||  |||| ||||   |||||||| |||| ||||| || ||||  || |||||||||| ||| | |||||| ||    
T  4266696 cttctttccaaagattggaatttaaagatgccaagtgat---tttgtggactttgatttaaaaaagaagcaaatgggccaatggtgtatatagaagggaa 4266600  T
Q  101 catagaggagagagcatttattacatcactctcaagttcat 141  Q
    ||||||| |||||||||| || |||||||||||||||||||    
T  4266599 catagagtagagagcattcataacatcactctcaagttcat 4266559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 142
Target Start/End: Complemental strand, 4514651 - 4514513
Alignment:
Q  1 cttctttccaaaggttggaacctaaagaatccaattgatgaatttgtggagtttggtttaataatgaaggtaaagggccaatggggtaaagagaaggaaa 100  Q
    ||||||||||||| |||||||||||||| ||||| ||||   |||||||| |||| || || || ||||  || |||||||||| ||| |||||||| |     
T  4514651 cttctttccaaagattggaacctaaagattccaagtgat---tttgtggactttgattcaaaaacgaagcaaatgggccaatggtgtatagagaagggag 4514555  T
Q  101 catagaggagagagcatttattacatcactctcaagttcatt 142  Q
    ||||||  | |||||||| || |||||||||||||| |||||    
T  4514554 catagaataaagagcattcataacatcactctcaagatcatt 4514513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 43 - 141
Target Start/End: Original strand, 4586277 - 4586375
Alignment:
Q  43 tttgtggagtttggtttaataatgaaggtaaagggccaatggggtaaagagaaggaaacatagaggagagagcatttattacatcactctcaagttcat 141  Q
    |||||||| |||| ||||| ||||| | ||||||||||||||  |||| |||||| ||| ||| ||||||| |||||||||||||  ||||||||||||    
T  4586277 tttgtggactttgatttaaaaatgatgataaagggccaatggcataaatagaagggaacttagtggagagaacatttattacatccttctcaagttcat 4586375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 160
Target Start/End: Original strand, 4568646 - 4568802
Alignment:
Q  1 cttctttccaaaggttggaacctaaagaatccaattgatgaatttgtggagtttggtttaataatgaaggtaaagggccaatggggtaaagagaaggaaa 100  Q
    ||||||||||||| ||||||||||||||| |||| || |   |||| ||| |||| || || || |||| |||||||||||||| ||||| |||||| |     
T  4568646 cttctttccaaagattggaacctaaagaagccaagtgct---tttggggattttgattcaaaaacgaagataaagggccaatggcgtaaatagaagggat 4568742  T
Q  101 catagaggagagagcatttattacatcactctcaagttcattgaatgtattcaaaacaat 160  Q
    | ||   || ||||| |||| |||||||||||||||||||||  | ||||| ||||||||    
T  4568743 cttaatagatagagcctttactacatcactctcaagttcattataagtattgaaaacaat 4568802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 2 - 141
Target Start/End: Original strand, 4458198 - 4458334
Alignment:
Q  2 ttctttccaaaggttggaacctaaagaatccaattgatgaatttgtggagtttggtttaataatgaaggtaaagggccaatggggtaaagagaaggaaac 101  Q
    |||||||||||| ||||||  ||||||  |||| ||||   |||||||| |||| ||||  || ||||  || |||||||||| ||| | |||||| |||    
T  4458198 ttctttccaaagattggaatttaaagatgccaagtgat---tttgtggactttgatttataaaagaagcaaatgggccaatggtgtatatagaagggaac 4458294  T
Q  102 atagaggagagagcatttattacatcactctcaagttcat 141  Q
    |||||| |||||| ||| || |||||||||||||||||||    
T  4458295 atagagtagagagtattcataacatcactctcaagttcat 4458334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 4598773 - 4598911
Alignment:
Q  1 cttctttccaaaggttggaacctaaagaatccaattgatgaatttgtggagtttggtttaataatgaaggtaaagggccaatggggtaaagagaaggaaa 100  Q
    ||||||||||||| |||| |||||||||  |||| || |   ||||| || |||| ||||| || |||| ||||||||||||||  |||| | |||| ||    
T  4598773 cttctttccaaagattggtacctaaagatgccaaatgct---tttgttgactttgatttaaaaacgaagataaagggccaatggcataaatacaagggaa 4598869  T
Q  101 catagaggagagagcatttattacatcactctcaagttcatt 142  Q
    ||||  ||||||| |||| | ||||||| |||||||||||||    
T  4598870 catactggagagaacattcaatacatcattctcaagttcatt 4598911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 4622742 - 4622880
Alignment:
Q  1 cttctttccaaaggttggaacctaaagaatccaattgatgaatttgtggagtttggtttaataatgaaggtaaagggccaatggggtaaagagaaggaaa 100  Q
    ||||||||||||| |||||||||| |||  |||| |||| |   ||||||||||| |||||||||||||||||||| |||| ||  || | ||| || ||    
T  4622742 cttctttccaaagattggaacctagagatgccaagtgatta---tgtggagtttgatttaataatgaaggtaaaggtccaacggtatacaaagatgggaa 4622838  T
Q  101 catagaggagagagcatttattacatcactctcaagttcatt 142  Q
    ||| ||  |||| ||||| ||  ||||| |||||||||||||    
T  4622839 cattgaatagagcgcattcatcgcatcagtctcaagttcatt 4622880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 4516923 - 4517060
Alignment:
Q  1 cttctttccaaaggttggaacctaaagaatccaattgatgaatttgtggagtttggtttaataatgaaggtaaagggccaatggggtaaagagaaggaaa 100  Q
    ||||||||||||| || ||||||| |||| |||| | ||   |||| ||| |||| || || ||||||| ||||||||||||||  |||| |||||| |     
T  4516923 cttctttccaaagattagaacctatagaagccaagttat---tttgcggactttgattcaaaaatgaagttaaagggccaatggcataaatagaagggat 4517019  T
Q  101 catagaggagagagcatttattacatcactctcaagttcat 141  Q
    | ||   || |||||||||||||||||| ||||||||||||    
T  4517020 cttaatagatagagcatttattacatcattctcaagttcat 4517060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 4256154 - 4256074
Alignment:
Q  1 cttctttccaaaggttggaacctaaagaatccaattgatgaatttgtggagtttggtttaataatgaaggtaaagggccaatgg 84  Q
    ||||||||||||| ||||||||||| ||  |||| |||  |   ||||||||||| |||||||||||||||||||| |||||||    
T  4256154 cttctttccaaagattggaacctaacgatgccaagtgacta---tgtggagtttgatttaataatgaaggtaaaggtccaatgg 4256074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 43 - 142
Target Start/End: Original strand, 4561145 - 4561244
Alignment:
Q  43 tttgtggagtttggtttaataatgaaggtaaagggccaatggggtaaagagaaggaaacatagaggagagagcatttattacatcactctcaagttcatt 142  Q
    |||||||| |||| ||||  || |||| ||| || ||||| | ||| |||||||| ||||||||  ||| |||||| || ||||||||||||||||||||    
T  4561145 tttgtggactttgatttacaaaagaagctaatggaccaattgtgtatagagaagggaacatagaatagaaagcattcataacatcactctcaagttcatt 4561244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 43 - 142
Target Start/End: Original strand, 4574949 - 4575048
Alignment:
Q  43 tttgtggagtttggtttaataatgaaggtaaagggccaatggggtaaagagaaggaaacatagaggagagagcatttattacatcactctcaagttcatt 142  Q
    |||||||| |||| ||||  || |||| ||| || ||||| | ||| |||||||| ||||||||  ||| |||||| || ||||||||||||||||||||    
T  4574949 tttgtggactttgatttacaaaagaagctaatggaccaattgtgtatagagaagggaacatagaatagaaagcattcataacatcactctcaagttcatt 4575048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 44 - 141
Target Start/End: Original strand, 4481335 - 4481432
Alignment:
Q  44 ttgtggagtttggtttaataatgaaggtaaagggccaatggggtaaagagaaggaaacatagaggagagagcatttattacatcactctcaagttcat 141  Q
    ||||||| |||| ||||| || ||||  || || ||||||| ||| |||||||| || |||||  |||||| ||| || |||||||||||||||||||    
T  4481335 ttgtggactttgatttaaaaaagaagccaatggaccaatggtgtatagagaagggaatatagaatagagagaattcataacatcactctcaagttcat 4481432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 43 - 104
Target Start/End: Original strand, 4506498 - 4506559
Alignment:
Q  43 tttgtggagtttggtttaataatgaaggtaaagggccaatggggtaaagagaaggaaacata 104  Q
    |||||||| |||| ||||  ||||||| |||||||||||| | ||| |||||||||||||||    
T  4506498 tttgtggactttgatttacaaatgaagttaaagggccaatagtgtatagagaaggaaacata 4506559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0199 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 65 - 291
Alignment:
Q  1 cttctttccaaaggttggaacctaaagaatccaattgatgaatttgtggagtttggtttaataatgaaggtaaagggccaatggggtaaagagaaggaaa 100  Q
    |||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  65 cttctttccaaaggttggaacctaaagattctaattgatgaatttgtggagtttggtttaataatgaaggtaaagggccaatggggtaaagagaaggaaa 164  T
Q  101 catagagga-gagagcatttattacatcactctcaagttcattgaatgtattcaaaacaattgtagagtctccaggaactttatcagccgcatcaattac 199  Q
    || |||||| ||||||  |||||||||||||||||||||||||||| |||||||||| ||||||||||||||   |||||||||||||  |||||||||     
T  165 caaagaggaggagagcggttattacatcactctcaagttcattgaaagtattcaaaataattgtagagtctctgtgaactttatcagcgacatcaattaa 264  T
Q  200 aaagtctaacataatatcatttggatc 226  Q
    |||||||||||||||||||||||||||    
T  265 aaagtctaacataatatcatttggatc 291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 167; Significance: 1e-89; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 1674828 - 1675054
Alignment:
Q  1 cttctttccaaaggttggaacctaaagaatccaattgatgaatttgtggagtttggtttaataatgaaggtaaagggccaatggggtaaagagaaggaaa 100  Q
    |||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1674828 cttctttccaaaggttggaacctaaagattctaattgatgaatttgtggagtttggtttaataatgaaggtaaagggccaatggggtaaagagaaggaaa 1674927  T
Q  101 catagagga-gagagcatttattacatcactctcaagttcattgaatgtattcaaaacaattgtagagtctccaggaactttatcagccgcatcaattac 199  Q
    || |||||| ||||||  |||||||||||||||||||||||||||| |||||||||| ||||||||||||||   |||||||||||||  |||||||||     
T  1674928 caaagaggaggagagcggttattacatcactctcaagttcattgaaagtattcaaaataattgtagagtctctgtgaactttatcagcgacatcaattaa 1675027  T
Q  200 aaagtctaacataatatcatttggatc 226  Q
    |||||||||||||||||||||||||||    
T  1675028 aaagtctaacataatatcatttggatc 1675054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 72 - 160
Target Start/End: Complemental strand, 20863305 - 20863217
Alignment:
Q  72 aaagggccaatggggtaaagagaaggaaacatagaggagagagcatttattacatcactctcaagttcattgaatgtattcaaaacaat 160  Q
    ||||||||||||| ||| |||||||| ||||||||  ||||| |||| || |||||||||||||| |||||||| ||||| ||||||||    
T  20863305 aaagggccaatggtgtatagagaagggaacatagaatagagaacattcataacatcactctcaagctcattgaaagtattgaaaacaat 20863217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 139; Significance: 7e-73; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 1 - 171
Target Start/End: Original strand, 1281716 - 1281886
Alignment:
Q  1 cttctttccaaaggttggaacctaaagaatccaattgatgaatttgtggagtttggtttaataatgaaggtaaagggccaatggggtaaagagaaggaaa 100  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||     
T  1281716 cttctttccaaaggttggaatctaaagaatccaattgatgaatttgtggagtttggtttaataatgaaggtaaagggccaatcgggtaaacagaaggaat 1281815  T
Q  101 catagaggagagagcatttattacatcactctcaagttcattgaatgtattcaaaacaattgtagagtctc 171  Q
     |||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| ||||||||||    
T  1281816 tatagaggagagagcatttattacatcactctcaagttcattgaaagtattcaaaagaatagtagagtctc 1281886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 24103601 - 24103738
Alignment:
Q  1 cttctttccaaaggttggaacctaaagaatccaattgatgaatttgtggagtttggtttaataatgaaggtaaagggccaatggggtaaagagaaggaaa 100  Q
    ||||||||||||| ||||||  ||||||  |||| ||||   |||||||| |||| ||||| || ||||  || |||||||||| ||| | |||||| ||    
T  24103601 cttctttccaaagattggaatttaaagatgccaagtgat---tttgtggactttgatttaaaaaagaagcaaatgggccaatggtgtatatagaagggaa 24103697  T
Q  101 catagaggagagagcatttattacatcactctcaagttcat 141  Q
    ||||||| |||||||||| || |||||||||||||||||||    
T  24103698 catagagtagagagcattcataacatcactctcaagttcat 24103738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 52 - 141
Target Start/End: Original strand, 24107025 - 24107114
Alignment:
Q  52 tttggtttaataatgaaggtaaagggccaatggggtaaagagaaggaaacatagaggagagagcatttattacatcactctcaagttcat 141  Q
    |||| |||||||||||||||||||| ||||| |  || | | |||| ||||||||  |||| | ||| ||||||||||||||||||||||    
T  24107025 tttgatttaataatgaaggtaaaggtccaatagtatataaaaaagggaacatagaatagagcgtattcattacatcactctcaagttcat 24107114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0477 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0477
Description:

Target: scaffold0477; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 4216 - 4082
Alignment:
Q  1 cttctttccaaaggttggaacctaaagaatccaattgatgaatttgtggagtttggtttaataatgaaggtaaagggccaatggggtaaagagaaggaaa 100  Q
    ||||||||||||| ||||||||||||||      ||  ||| | ||||||||||| ||||||||||||| |||||| |||||||  || | |||||| ||    
T  4216 cttctttccaaagattggaacctaaaga------ttagtgattatgtggagtttgatttaataatgaagttaaaggtccaatggtatataaagaagggaa 4123  T
Q  101 catagaggagagagcatttattacatcactctcaagttcat 141  Q
    ||||||  |||||||||| | |||| | |||||||||||||    
T  4122 catagaatagagagcattcaatacaccgctctcaagttcat 4082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 3087022 - 3087159
Alignment:
Q  1 cttctttccaaaggttggaacctaaagaatccaattgatgaatttgtggagtttggtttaataatgaaggtaaagggccaatggggtaaagagaaggaaa 100  Q
    ||||||||||||| ||||||||||||||  |||| ||||   | |||| |||||| |||| || ||||||||| || |||||||  || |  ||||| ||    
T  3087022 cttctttccaaagattggaacctaaagatgccaagtgat---tatgtgaagtttgatttagtagtgaaggtaatggtccaatggtatataatgaagggaa 3087118  T
Q  101 catagaggagagagcatttattacatcactctcaagttcat 141  Q
    || |||  | || ||||| ||||||||||||||||||||||    
T  3087119 cacagaatatagcgcattcattacatcactctcaagttcat 3087159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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