View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4081_low_5 (Length: 549)
Name: NF4081_low_5
Description: NF4081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4081_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 210; Significance: 1e-115; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 231 - 461
Target Start/End: Complemental strand, 41133059 - 41132829
Alignment:
| Q |
231 |
aagaaaatggtgagaaaggggggaaggggaagaagaaggcaatggatctgactgagttgggtatggtgaaaacgaagtaggctccacaactatttatata |
330 |
Q |
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| T |
41133059 |
aagaaaatggtgagaaaggggggaaggggaagaagaaggcaatggatctgactgagttgggtatggtgaaaacgaagtaggctccacaactatttatata |
41132960 |
T |
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| Q |
331 |
caagtgttaaatcttgatgatggccactatcattttggcatttggattcacattgtgttacacnnnnnnncttcctttatagttagtgtgtgtcaatgtc |
430 |
Q |
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| T |
41132959 |
caagtgttaaatcttgatgatggccactatcattttggcatttggattcacattgtgttacactttttttcttcctttatagttagtgtgtgtcaatgtc |
41132860 |
T |
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| Q |
431 |
taaattggtacaaacacaaaacaactagatc |
461 |
Q |
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| T |
41132859 |
taaattggtacaaacacaaaacaactagatc |
41132829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 15 - 110
Target Start/End: Complemental strand, 41133270 - 41133176
Alignment:
| Q |
15 |
aatgacccatttaataaaattaatagaaaacgatatattcattgataatgaaagcaaaagcactaaccttttataagaaacggagaaaaatccaac |
110 |
Q |
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| T |
41133270 |
aatgacccatttaataaaattaatagaaaacgatatattcattgataatgaaagcaaaagcactaacc-tttataagaaacggagaaaaaaccaac |
41133176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 487 - 532
Target Start/End: Complemental strand, 41132788 - 41132743
Alignment:
| Q |
487 |
aagtttggaaaattcattccattagagcatacatcaagattcaatc |
532 |
Q |
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| T |
41132788 |
aagtttggaagattcattcgattagagcatacatcaagattcaatc |
41132743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 137 - 166
Target Start/End: Complemental strand, 41133153 - 41133124
Alignment:
| Q |
137 |
tttcttgatttaaataaacaaatacttaga |
166 |
Q |
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| T |
41133153 |
tttcttgatttaaataaacaaatacttaga |
41133124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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