View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4082_high_11 (Length: 456)
Name: NF4082_high_11
Description: NF4082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4082_high_11 |
 | |
|
| [»] scaffold0557 (4 HSPs) |
| | |
|
| [»] scaffold0115 (4 HSPs) |
| | |
|
| [»] scaffold0442 (4 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 315; Significance: 1e-177; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 94 - 440
Target Start/End: Complemental strand, 21006392 - 21006046
Alignment:
| Q |
94 |
ctaaattcgaatatattggtgcttattcccaaggtgtcgggtgctcagaccatggaagacgtccgaccatttgcattggaacattagctacttcagcatt |
193 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
21006392 |
ctaaattcgaatatattggtgcttattcccaaggtgtcaggtgcttagaccatggaagacgtccgacctattgcattggaacattagctacttcagcatt |
21006293 |
T |
|
| Q |
194 |
agacactttgtagtgatagtagctagctgcaaccccttgttggccataaaaactttggtccatttgaggctgcatgttttggttaaatctgggagacgca |
293 |
Q |
| |
|
| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21006292 |
atgcactttgtagtgatagtagctatttgcaaccccttgttggccataaaaactttggtccatttgaggctgcatgttttggttaaatctgggagacgca |
21006193 |
T |
|
| Q |
294 |
accatgttcataactggtattgaagtactcatcaatgaagtattcatcatgttgttgctcctctgttcttgatgaacacttgaagtgtaaacttgaggtt |
393 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21006192 |
accatgttcataactggtattgaagtactcatcaatgaagtattcatcatgttgttgctcctctgttcttgatgaacacttgaagtgtaaacttgaggtt |
21006093 |
T |
|
| Q |
394 |
gcatgttagaattaacactaggagttggaaccatagtactcatgatg |
440 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21006092 |
gcatgttagaattaacactaggagttggaaccatagtactcatgatg |
21006046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 164 - 440
Target Start/End: Complemental strand, 20903606 - 20903330
Alignment:
| Q |
164 |
ttgcattggaacattagctacttcagcattagacactttgtagtgatagtagctagctgcaaccccttgttggccataaaaactttggtccatttgaggc |
263 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| ||||||| |||||||||||||| || | |||||||||| |||| ||| |||| ||||||||| || |
|
|
| T |
20903606 |
ttgcattggaacattagctacttcagtattaggcactttgcagtgatagtagctatttggacccccttgttgcgcatagaaattttgatccatttgatgc |
20903507 |
T |
|
| Q |
264 |
tgcatgttttggttaaatctgggagacgcaaccatgttcataactggtattgaagtactcatcaatgaagtattcatcatgttgttgctcctctgttctt |
363 |
Q |
| |
|
||||||||||||||||||| |||| |||||||||||||||||||| |||| ||||||||||| || ||||||||||||| |||||||| |||||| || |
|
|
| T |
20903506 |
tgcatgttttggttaaatcctggagttgcaaccatgttcataactggcattggagtactcatcattgtagtattcatcatggtgttgctcttctgttgtt |
20903407 |
T |
|
| Q |
364 |
gatgaacacttgaagtgtaaacttgaggttgcatgttagaattaacactaggagttggaaccatagtactcatgatg |
440 |
Q |
| |
|
||||||||||||||||||| |||||||| |||| ||| |||||||| |||||||||||||||||||||||||||| |
|
|
| T |
20903406 |
gatgaacacttgaagtgtagacttgaggatgcaagttttgattaacaccaggagttggaaccatagtactcatgatg |
20903330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 164 - 440
Target Start/End: Complemental strand, 20922206 - 20921936
Alignment:
| Q |
164 |
ttgcattggaacattagctacttcagcattagacactttgtagtgatagtagctagctgcaaccccttgttggccataaaaactttggtccatttgaggc |
263 |
Q |
| |
|
||||||||||||||||||||||||||||| | ||||||| | ||||| |||||| |||| |||||||||| |||| ||| |||| ||||||||| || |
|
|
| T |
20922206 |
ttgcattggaacattagctacttcagcatcacgcactttgcaatgataatagctatttgcacccccttgttgcgcatagaaattttgatccatttgatgc |
20922107 |
T |
|
| Q |
264 |
tgcatgttttggttaaatctgggagacgcaaccatgttcataactggtattgaagtactcatcaatgaagtattcatcatgttgttgctcctctgttctt |
363 |
Q |
| |
|
||||||||||||||||||| ||||| |||||||||||||||||||| |||||| ||||||||| ||| |||||||||||| |||| ||| |||||| || |
|
|
| T |
20922106 |
tgcatgttttggttaaatccgggagtggcaaccatgttcataactggcattgaattactcatcattgaggtattcatcatggtgtttctcttctgttgtt |
20922007 |
T |
|
| Q |
364 |
gatgaacacttgaagtgtaaacttgaggttgcatgttagaattaacactaggagttggaaccatagtactcatgatg |
440 |
Q |
| |
|
||||||||||||||||||| || ||||| |||| | || ||||||||||||||||||||||||||||||||| |
|
|
| T |
20922006 |
gatgaacacttgaagtgtagacctgaggatgca------agtttacactaggagttggaaccatagtactcatgatg |
20921936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 63 - 91
Target Start/End: Complemental strand, 21006571 - 21006543
Alignment:
| Q |
63 |
tatggtgactgatgcagataatgctgagt |
91 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
21006571 |
tatggtgactgatgcagataatgctgagt |
21006543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 157; Significance: 3e-83; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 164 - 440
Target Start/End: Complemental strand, 41336764 - 41336488
Alignment:
| Q |
164 |
ttgcattggaacattagctacttcagcattagacactttgtagtgatagtagctagctgcaaccccttgttggccataaaaactttggtccatttgaggc |
263 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||| ||| |||||| ||||| |||||||||| |||| ||| |||| ||||||||| || |
|
|
| T |
41336764 |
ttgcattggaacattagctacttcagcattacgcactttgtagttataatagctatctgcacccccttgttgcgcatagaaattttgatccatttgatgc |
41336665 |
T |
|
| Q |
264 |
tgcatgttttggttaaatctgggagacgcaaccatgttcataactggtattgaagtactcatcaatgaagtattcatcatgttgttgctcctctgttctt |
363 |
Q |
| |
|
|||||||||||||||||| ||||| |||||||||||||||||||| |||||| ||||||||| ||| |||||||||||| |||||||| |||||| || |
|
|
| T |
41336664 |
tgcatgttttggttaaatacgggagttgcaaccatgttcataactggcattgaattactcatcattgaggtattcatcatggtgttgctcttctgttgtt |
41336565 |
T |
|
| Q |
364 |
gatgaacacttgaagtgtaaacttgaggttgcatgttagaattaacactaggagttggaaccatagtactcatgatg |
440 |
Q |
| |
|
||||||||||||||||||| |||||||| |||| ||| |||||||| |||||||||||||||||||||||||||| |
|
|
| T |
41336564 |
gatgaacacttgaagtgtagacttgaggatgcaagttttgattaacaccaggagttggaaccatagtactcatgatg |
41336488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0557 (Bit Score: 69; Significance: 9e-31; HSPs: 4)
Name: scaffold0557
Description:
Target: scaffold0557; HSP #1
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 291 - 440
Target Start/End: Original strand, 5728 - 5883
Alignment:
| Q |
291 |
gcaaccatgttcataactggtattgaagtactcatcaatgaagtattcatcatgttgttgctcctctgttcttgatgaacacttgaagtgtaaact---- |
386 |
Q |
| |
|
|||||||||||||||||| | ||| ||||||||||| |||||||||||||||| |||||||| |||||| ||||| ||||||||||||||| ||| |
|
|
| T |
5728 |
gcaaccatgttcataacttgcattaaagtactcatcgttgaagtattcatcatggtgttgctcttctgttgttgattaacacttgaagtgtagacttgaa |
5827 |
T |
|
| Q |
387 |
--tgaggttgcatgttagaattaacactaggagttggaaccatagtactcatgatg |
440 |
Q |
| |
|
||| |||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5828 |
actgaatgtgcatgttttgattaacactaggagttggaaccatagtactcatgatg |
5883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0557; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 291 - 440
Target Start/End: Complemental strand, 5324 - 5169
Alignment:
| Q |
291 |
gcaaccatgttcataactggtattgaagtactcatcaatgaagtattcatcatgttgttgctcctctgttcttgatgaacacttgaagtgtaaacttgag |
390 |
Q |
| |
|
|||||||||||| ||||||| ||| ||| |||||||| |||||||||||||||| |||||||| |||||| ||||| ||||||||||||||| ||||||| |
|
|
| T |
5324 |
gcaaccatgttcgtaactggcattaaagcactcatcattgaagtattcatcatggtgttgctcttctgttgttgattaacacttgaagtgtagacttgag |
5225 |
T |
|
| Q |
391 |
------gttgcatgttagaattaacactaggagttggaaccatagtactcatgatg |
440 |
Q |
| |
|
|||||||| ||||||||| |||||||||||||||||||||| |||| |
|
|
| T |
5224 |
acagcacgtgcatgttttcattaacacttggagttggaaccatagtactcacgatg |
5169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0557; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 164 - 261
Target Start/End: Complemental strand, 5424 - 5327
Alignment:
| Q |
164 |
ttgcattggaacattagctacttcagcattagacactttgtagtgatagtagctagctgcaaccccttgttggccataaaaactttggtccatttgag |
261 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| | |||||||||||| | ||| |||| |||||||||| |
|
|
| T |
5424 |
ttgcattggaacattagctacttcagcattaggcactttgtagtgatagtagctatttgcatcaccttgttggccaaataaattttgatccatttgag |
5327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0557; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 164 - 258
Target Start/End: Original strand, 5628 - 5722
Alignment:
| Q |
164 |
ttgcattggaacattagctacttcagcattagacactttgtagtgatagtagctagctgcaaccccttgttggccataaaaactttggtccattt |
258 |
Q |
| |
|
|||||||||||| |||||||||||| |||||| |||||||||||||||||||||| | || | |||||||||||| | ||| |||||||||||| |
|
|
| T |
5628 |
ttgcattggaaccttagctacttcaccattaggcactttgtagtgatagtagctatttccatcaccttgttggccaaagaaattttggtccattt |
5722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0115 (Bit Score: 65; Significance: 2e-28; HSPs: 4)
Name: scaffold0115
Description:
Target: scaffold0115; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 291 - 444
Target Start/End: Complemental strand, 47177 - 47018
Alignment:
| Q |
291 |
gcaaccatgttcataactggtattgaagtactcatcaatgaagtattcatcatgttgttgctcctctgttcttgatgaacacttgaagtgtaaacttgag |
390 |
Q |
| |
|
|||||||||||||||||||| ||| ||||||||||| |||||||||||||||| |||| || |||||| ||||| || |||||||||||| ||||||| |
|
|
| T |
47177 |
gcaaccatgttcataactggcattaaagtactcatcgttgaagtattcatcatggtgttactgttctgttgttgattaaaacttgaagtgtagacttgag |
47078 |
T |
|
| Q |
391 |
------gttgcatgttagaattaacactaggagttggaaccatagtactcatgatgatgt |
444 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
47077 |
actgcatgtgcatgttttgattaacactaggagttggaaccatagtactcacgatgatgt |
47018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0115; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 291 - 390
Target Start/End: Original strand, 47840 - 47939
Alignment:
| Q |
291 |
gcaaccatgttcataactggtattgaagtactcatcaatgaagtattcatcatgttgttgctcctctgttcttgatgaacacttgaagtgtaaacttgag |
390 |
Q |
| |
|
|||||||||||||||||||| ||| ||||| ||||| |||||||||||||||| |||||||| |||||| ||||| ||||||||||| ||| ||||||| |
|
|
| T |
47840 |
gcaaccatgttcataactggcattaaagtaatcatcgttgaagtattcatcatggtgttgctcttctgttgttgattaacacttgaagcgtagacttgag |
47939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0115; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 164 - 261
Target Start/End: Complemental strand, 47277 - 47180
Alignment:
| Q |
164 |
ttgcattggaacattagctacttcagcattagacactttgtagtgatagtagctagctgcaaccccttgttggccataaaaactttggtccatttgag |
261 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||| |||||| | | | ||||||||||||| ||| ||||||||||||||| |
|
|
| T |
47277 |
ttgcattggaacattagctacttcagcattaggcactttgtagtgattatagctatttttatcaccttgttggccattgaaattttggtccatttgag |
47180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0115; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 404 - 440
Target Start/End: Original strand, 47962 - 47998
Alignment:
| Q |
404 |
attaacactaggagttggaaccatagtactcatgatg |
440 |
Q |
| |
|
||||||||||||||||||||||||| |||||| |||| |
|
|
| T |
47962 |
attaacactaggagttggaaccataatactcacgatg |
47998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0442 (Bit Score: 59; Significance: 8e-25; HSPs: 4)
Name: scaffold0442
Description:
Target: scaffold0442; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 164 - 258
Target Start/End: Original strand, 9043 - 9137
Alignment:
| Q |
164 |
ttgcattggaacattagctacttcagcattagacactttgtagtgatagtagctagctgcaaccccttgttggccataaaaactttggtccattt |
258 |
Q |
| |
|
||||||||||||||||||||||||| |||||| |||||||||||||||||||||| |||| | |||||||||||| | ||| |||||||||||| |
|
|
| T |
9043 |
ttgcattggaacattagctacttcaacattaggcactttgtagtgatagtagctatttgcatcaccttgttggccaaagaaattttggtccattt |
9137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0442; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 329 - 440
Target Start/End: Original strand, 9160 - 9277
Alignment:
| Q |
329 |
tgaagtattcatcatgttgttgctcctctgttcttgatgaacacttgaagtgtaaacttga------ggttgcatgttagaattaacactaggagttgga |
422 |
Q |
| |
|
|||||||||||||||| |||||||| |||||||||||| ||||||||||||||| |||||| |||||||| ||||||||||||||||||| |
|
|
| T |
9160 |
tgaagtattcatcatggtgttgctcttctgttcttgattaacacttgaagtgtagacttgaaactgcatgtgcatgttttgattaacactaggagttgga |
9259 |
T |
|
| Q |
423 |
accatagtactcatgatg |
440 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
9260 |
accatagtactcatgatg |
9277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0442; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 164 - 218
Target Start/End: Complemental strand, 8789 - 8735
Alignment:
| Q |
164 |
ttgcattggaacattagctacttcagcattagacactttgtagtgatagtagcta |
218 |
Q |
| |
|
||||||||||||||||||||||||| |||||| |||||||||||||||||||||| |
|
|
| T |
8789 |
ttgcattggaacattagctacttcaacattaggcactttgtagtgatagtagcta |
8735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0442; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 291 - 399
Target Start/End: Complemental strand, 8689 - 8581
Alignment:
| Q |
291 |
gcaaccatgttcataactggtattgaagtactcatcaatgaagtattcatcatgttgttgctcctctgttcttgatgaacacttgaagtgtaaacttgag |
390 |
Q |
| |
|
|||||||||||||||||||| ||| | ||||||| |||||||||||||||| | |||||| | |||| ||||| ||||||||| ||||| ||||||| |
|
|
| T |
8689 |
gcaaccatgttcataactggcattaatacactcatcgttgaagtattcatcatggttttgctcttttgttgttgattaacacttgaggtgtagacttgag |
8590 |
T |
|
| Q |
391 |
gttgcatgt |
399 |
Q |
| |
|
||||||| |
|
|
| T |
8589 |
actgcatgt |
8581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 221 - 353
Target Start/End: Complemental strand, 2589640 - 2589508
Alignment:
| Q |
221 |
tgcaaccccttgttggccataaaaactttggtccatttgaggctgcatgttttggttaaatctgggagacgcaaccatgttcataactggtattgaagta |
320 |
Q |
| |
|
|||| |||||||||| |||| ||| | || ||||||||||| ||||||||||||||||||| |||| | || |||||| ||||||| | |||||| |
|
|
| T |
2589640 |
tgcatccccttgttgatcatagaaattctgctccatttgaggttgcatgttttggttaaatccaggagtaggaatcatgttgctaactggcaaagaagta |
2589541 |
T |
|
| Q |
321 |
ctcatcaatgaagtattcatcatgttgttgctc |
353 |
Q |
| |
|
|| |||| ||||||||||||||| || ||||| |
|
|
| T |
2589540 |
cttatcatggaagtattcatcatggtgctgctc |
2589508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University