View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4082_high_13 (Length: 444)

Name: NF4082_high_13
Description: NF4082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4082_high_13
NF4082_high_13
[»] chr4 (13 HSPs)
chr4 (212-426)||(52986840-52987053)
chr4 (16-108)||(52986644-52986736)
chr4 (212-290)||(55659810-55659888)
chr4 (1-106)||(54626843-54626946)
chr4 (212-282)||(54862634-54862704)
chr4 (213-294)||(55634843-55634924)
chr4 (1-106)||(54862405-54862508)
chr4 (37-106)||(51315717-51315786)
chr4 (240-294)||(50192566-50192620)
chr4 (17-108)||(55635043-55635132)
chr4 (37-90)||(50192334-50192387)
chr4 (39-87)||(3672106-3672154)
chr4 (239-294)||(54626642-54626697)
[»] chr3 (1 HSPs)
chr3 (213-294)||(16437813-16437894)
[»] chr2 (2 HSPs)
chr2 (212-299)||(13401034-13401121)
chr2 (39-106)||(13401227-13401294)
[»] chr8 (2 HSPs)
chr8 (39-87)||(9889346-9889394)
chr8 (217-279)||(9889162-9889224)


Alignment Details
Target: chr4 (Bit Score: 203; Significance: 1e-111; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 212 - 426
Target Start/End: Original strand, 52986840 - 52987053
Alignment:
Q  212 ctgaagttgaggtaaatcgtccctaaatagaaactcaacaaaacgaggaacaacaccagattgaataacttgctcaatcggagagcttttttctacacac 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  52986840 ctgaagttgaggtaaatcgtccctaaatagaaactcaacaaaacgaggaacaacagcagattgaataacttgctcaatcggagagcttttttctacacac 52986939  T
Q  312 aaacatcaaacgctttaacagttagaatgaaagcaacatagtagtaatgtaatgcattaaaaacatgagaaaatcaacagttactggttgaaagaagcct 411  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  52986940 aaacatcaaacgctttaacagttagaatgaaagcaacatagtagtaatgtaatgcattaaaaacatgagaaaatcaacagttact-gttgaaagaagcct 52987038  T
Q  412 ccgaatttgcttagt 426  Q
    |||||||||||||||    
T  52987039 ccgaatttgcttagt 52987053  T

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Target: chr4; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 16 - 108
Target Start/End: Original strand, 52986644 - 52986736
Alignment:
Q  16 ttgacaaacattggtactgctctccatgatcaattaccaccttagtgttcttagaagttccagctactatgtttgaaagtgccgaagcagctt 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  52986644 ttgacaaacattggtactgctctccatgatcaattaccaccttagtgttcttagaagttccagctactatgtttgaaagtgccgaagtagctt 52986736  T

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Target: chr4; HSP #3
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 212 - 290
Target Start/End: Original strand, 55659810 - 55659888
Alignment:
Q  212 ctgaagttgaggtaaatcgtccctaaatagaaactcaacaaaacgaggaacaacaccagattgaataacttgctcaatc 290  Q
    |||||||||||| |||||||||||||||||||| |||||||||||||||||||| |||||||||||||| || ||||||    
T  55659810 ctgaagttgaggaaaatcgtccctaaatagaaattcaacaaaacgaggaacaacgccagattgaataacatgatcaatc 55659888  T

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Target: chr4; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 54626946 - 54626843
Alignment:
Q  1 ggtgaactgagtagattgacaaacattggtactgctctccatgatcaattaccaccttagtgttcttagaagttccagctactatgtttgaaagtgccga 100  Q
    |||||||| || || |||||||||||||||||||| |  ||||||||| ||||||||||||||||| ||||||||||||| |||||||||  |||||| |    
T  54626946 ggtgaactaagaagcttgacaaacattggtactgcgc--catgatcaactaccaccttagtgttctcagaagttccagctgctatgtttgtgagtgccca 54626849  T
Q  101 agcagc 106  Q
    ||||||    
T  54626848 agcagc 54626843  T

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Target: chr4; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 212 - 282
Target Start/End: Original strand, 54862634 - 54862704
Alignment:
Q  212 ctgaagttgaggtaaatcgtccctaaatagaaactcaacaaaacgaggaacaacaccagattgaataactt 282  Q
    |||||||||||| ||||| |||||| ||||||| | |||||||||||||||||||||||||||||||||||    
T  54862634 ctgaagttgaggaaaatcctccctatatagaaattgaacaaaacgaggaacaacaccagattgaataactt 54862704  T

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Target: chr4; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 213 - 294
Target Start/End: Complemental strand, 55634924 - 55634843
Alignment:
Q  213 tgaagttgaggtaaatcgtccctaaatagaaactcaacaaaacgaggaacaacaccagattgaataacttgctcaatcggag 294  Q
    |||||| |||| |||| |||||| |||||||| | ||||||||||| |||||||||||||||||||||||| ||||||||||    
T  55634924 tgaagtcgaggaaaattgtcccttaatagaaattgaacaaaacgagaaacaacaccagattgaataacttggtcaatcggag 55634843  T

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Target: chr4; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 54862405 - 54862508
Alignment:
Q  1 ggtgaactgagtagattgacaaacattggtactgctctccatgatcaattaccaccttagtgttcttagaagttccagctactatgtttgaaagtgccga 100  Q
    |||||||| ||||| |||| ||| ||||||||||| |  |||||||||||||||||||||||||||  |||||||||| | |||||||||  |||||| |    
T  54862405 ggtgaactaagtagcttgataaatattggtactgccc--catgatcaattaccaccttagtgttctccgaagttccagatgctatgtttgtgagtgccca 54862502  T
Q  101 agcagc 106  Q
    ||||||    
T  54862503 agcagc 54862508  T

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Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 37 - 106
Target Start/End: Complemental strand, 51315786 - 51315717
Alignment:
Q  37 ctccatgatcaattaccaccttagtgttcttagaagttccagctactatgtttgaaagtgccgaagcagc 106  Q
    ||||||||||||||| || ||||||||||| ||||||||||||| ||||||||| ||||||  |||||||    
T  51315786 ctccatgatcaattagcaacttagtgttctcagaagttccagctgctatgtttgtaagtgcgaaagcagc 51315717  T

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Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 240 - 294
Target Start/End: Original strand, 50192566 - 50192620
Alignment:
Q  240 agaaactcaacaaaacgaggaacaacaccagattgaataacttgctcaatcggag 294  Q
    ||||||||||||||||| || |||||||||||||||||||| | |||||||||||    
T  50192566 agaaactcaacaaaacgtggcacaacaccagattgaataacctcctcaatcggag 50192620  T

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Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 17 - 108
Target Start/End: Complemental strand, 55635132 - 55635043
Alignment:
Q  17 tgacaaacattggtactgctctccatgatcaattaccaccttagtgttcttagaagttccagctactatgtttgaaagtgccgaagcagctt 108  Q
    ||||||||||||||| || || || |||||||||||||||||| |||||| ||||||||| | | |||||||||  |||||| |||||||||    
T  55635132 tgacaaacattggtattg-tc-ccgtgatcaattaccaccttaatgttctcagaagttccggatgctatgtttgtgagtgcccaagcagctt 55635043  T

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Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 37 - 90
Target Start/End: Original strand, 50192334 - 50192387
Alignment:
Q  37 ctccatgatcaattaccaccttagtgttcttagaagttccagctactatgtttg 90  Q
    |||| |||||||| |||||||||||||||| ||||||||||| | |||||||||    
T  50192334 ctccgtgatcaatcaccaccttagtgttctcagaagttccagatgctatgtttg 50192387  T

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Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 39 - 87
Target Start/End: Original strand, 3672106 - 3672154
Alignment:
Q  39 ccatgatcaattaccaccttagtgttcttagaagttccagctactatgt 87  Q
    |||||||||||||| ||||||||||||| |||||||||| || ||||||    
T  3672106 ccatgatcaattacaaccttagtgttctcagaagttccacctgctatgt 3672154  T

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Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 239 - 294
Target Start/End: Complemental strand, 54626697 - 54626642
Alignment:
Q  239 tagaaactcaacaaaacgaggaacaacaccagattgaataacttgctcaatcggag 294  Q
    |||||| | ||||||||| ||||||||||||||||||||||| |  ||||||||||    
T  54626697 tagaaattgaacaaaacggggaacaacaccagattgaataacatcatcaatcggag 54626642  T

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Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 213 - 294
Target Start/End: Complemental strand, 16437894 - 16437813
Alignment:
Q  213 tgaagttgaggtaaatcgtccctaaatagaaactcaacaaaacgaggaacaacaccagattgaataacttgctcaatcggag 294  Q
    |||||| |||| |||| |||||| |||||||| | ||||||||||| |||||||||||||||||||||||| ||||||||||    
T  16437894 tgaagtcgaggaaaattgtcccttaatagaaattgaacaaaacgagaaacaacaccagattgaataacttggtcaatcggag 16437813  T

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Target: chr2 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 212 - 299
Target Start/End: Complemental strand, 13401121 - 13401034
Alignment:
Q  212 ctgaagttgaggtaaatcgtccctaaatagaaactcaacaaaacgaggaacaacaccagattgaataacttgctcaatcggagagctt 299  Q
    ||||||||| || ||||| |||| || |||||||| |||||| || ||||||||||||||||||||||||| ||||||||||| ||||    
T  13401121 ctgaagttggggaaaatcctcccgaactagaaactgaacaaagcggggaacaacaccagattgaataacttcctcaatcggagggctt 13401034  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 39 - 106
Target Start/End: Complemental strand, 13401294 - 13401227
Alignment:
Q  39 ccatgatcaattaccaccttagtgttcttagaagttccagctactatgtttgaaagtgccgaagcagc 106  Q
    ||||||||||||||||||||||| |||| ||||||||| | | ||||||||| ||| ||| |||||||    
T  13401294 ccatgatcaattaccaccttagtattctcagaagttccggatgctatgtttgtaagagcccaagcagc 13401227  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 39 - 87
Target Start/End: Complemental strand, 9889394 - 9889346
Alignment:
Q  39 ccatgatcaattaccaccttagtgttcttagaagttccagctactatgt 87  Q
    |||||||||||||| ||||||||||||| |||||||||| || ||||||    
T  9889394 ccatgatcaattacaaccttagtgttctcagaagttccacctgctatgt 9889346  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 217 - 279
Target Start/End: Complemental strand, 9889224 - 9889162
Alignment:
Q  217 gttgaggtaaatcgtccctaaatagaaactcaacaaaacgaggaacaacaccagattgaataa 279  Q
    ||||||| ||||||||  ||| |||||| ||||||| |||||||||| || ||||||||||||    
T  9889224 gttgaggaaaatcgtcaataactagaaattcaacaagacgaggaacagcatcagattgaataa 9889162  T

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