View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4082_high_15 (Length: 410)
Name: NF4082_high_15
Description: NF4082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4082_high_15 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 290; Significance: 1e-162; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 11 - 395
Target Start/End: Complemental strand, 32870445 - 32870063
Alignment:
| Q |
11 |
atgagaatgagggagtaatatataaactctatatggtggtatagcacttacccactcaaccaaactaacgtgcttgtgagggttagctttatcaatcggt |
110 |
Q |
| |
|
||||||| |||||||||||||||||||||||| ||||||||| |||||||||||||||||||| |||||| | |||||||||||||||||||||||| | |
|
|
| T |
32870445 |
atgagaaggagggagtaatatataaactctat--ggtggtataacacttacccactcaaccaaattaacgtccatgtgagggttagctttatcaatcgct |
32870348 |
T |
|
| Q |
111 |
cgtcgtccagttattaactcaaggagcacgactccataagagtaaccatctgatttatcagtaagttgtccagtataagcatattctggatccagatacc |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
32870347 |
actcgtccagttattaactcaaggagcacgactccataagagtaaacatcggatttatcagtaagtcgtccagtataagcatattctggatccagatacc |
32870248 |
T |
|
| Q |
211 |
tgtaagcagctattgataattcatgagcttaatatatcataaatgatatgttgagaggaagggaataaatttgttcgtacccaaaagtccccttcacttg |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| ||||||||||||||||| |
|
|
| T |
32870247 |
tgtaagcagctattgataattcatgagcttaatatatcataaatgatatgttgagaggaagggaataaattttttcatacccgaaagtccccttcacttg |
32870148 |
T |
|
| Q |
311 |
agtagaaatgggagtactggaatcaggtgcatcctttgcaagaccaaaatctgcaacctgtcaacagaaatttgatactaaatta |
395 |
Q |
| |
|
|||||||| | |||| ||||||||||||| ||||||||||||||||||||| ||||||| |||||||||||| |||||||||||| |
|
|
| T |
32870147 |
agtagaaacgtgagtgctggaatcaggtgaatcctttgcaagaccaaaatcagcaacctttcaacagaaattcgatactaaatta |
32870063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 26 - 247
Target Start/End: Complemental strand, 32903757 - 32903541
Alignment:
| Q |
26 |
taatatataaactctatatggtggtatagcacttacccactcaaccaaactaacgtgcttgtgagggttagctttatcaatcggtcgtcgtccagttatt |
125 |
Q |
| |
|
||||||||||||||| |||||| | ||||||||||||||||||||||| | | | ||| || | | ||||||||| ||||||||||||||||| | |
|
|
| T |
32903757 |
taatatataaactctctatggt-----aacacttacccactcaaccaaactatcatccatgtaagtctgatctttatcaaccggtcgtcgtccagttaat |
32903663 |
T |
|
| Q |
126 |
aactcaaggagcacgactccataagagtaaccatctgatttatcagtaagttgtccagtataagcatattctggatccagatacctgtaagcagctattg |
225 |
Q |
| |
|
||||||||||||| ||||||||||||| || ||||||||||||| ||||||| |||| || ||||||||||||| ||||||||||||| |||| || | |
|
|
| T |
32903662 |
aactcaaggagcatgactccataagagaaaacatctgatttatcggtaagttttccactagcagcatattctggagccagatacctgtagacagcaatag |
32903563 |
T |
|
| Q |
226 |
ataattcatgagcttaatatat |
247 |
Q |
| |
|
||| |||||||||| |||||| |
|
|
| T |
32903562 |
atagctcatgagcttgatatat |
32903541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 265 - 395
Target Start/End: Complemental strand, 32903496 - 32903365
Alignment:
| Q |
265 |
gaggaagggaataaatttgtt-cgtacccaaaagtccccttcacttgagtagaaatgggagtactggaatcaggtgcatcctttgcaagaccaaaatctg |
363 |
Q |
| |
|
|||||||| |||||||||||| | ||||| ||||||||| ||||| ||||||||| |||| || ||||| ||| |||||||||||||||||| | |
|
|
| T |
32903496 |
gaggaaggaaataaatttgtttcatacccgaaagtccccatcactcgagtagaaacatgagtgttgagatcagaagcaatctttgcaagaccaaaatcag |
32903397 |
T |
|
| Q |
364 |
caacctgtcaacagaaatttgatactaaatta |
395 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
32903396 |
caacctgtcaacagaaatttgatactaaatta |
32903365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 83; Significance: 3e-39; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 55 - 229
Target Start/End: Complemental strand, 16394745 - 16394571
Alignment:
| Q |
55 |
cacttacccactcaaccaaactaacgtgcttgtgagggttagctttatcaatcggtcgtcgtccagttattaactcaaggagcacgactccataagagta |
154 |
Q |
| |
|
||||||||||||||||||||||| ||| | ||| || ||| ||||||||||||| |||||||||||||||||||||||| | ||||||||||||| | |
|
|
| T |
16394745 |
cacttacccactcaaccaaactatcgttcatgtaagtcttatctttatcaatcggctttcgtccagttattaactcaaggagtatgactccataagagaa |
16394646 |
T |
|
| Q |
155 |
accatctgatttatcagtaagttgtccagtataagcatattctggatccagatacctgtaagcagctattgataa |
229 |
Q |
| |
|
| |||||||||| || |||||||||||| || | ||||||||||| ||| ||||||||||||||| |||||||| |
|
|
| T |
16394645 |
aacatctgatttgtctgtaagttgtccactagagacatattctggagccatatacctgtaagcagcaattgataa |
16394571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University