View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4082_high_18 (Length: 398)
Name: NF4082_high_18
Description: NF4082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4082_high_18 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 15 - 373
Target Start/End: Complemental strand, 26814564 - 26814206
Alignment:
| Q |
15 |
aatatataagagataataatcattttaatttttgaacgtgtgtaacaagtaaccatagtagttcttaaatttgatgaaattcatgtaataattgttatgt |
114 |
Q |
| |
|
|||||||||| ||||||||||||||| |||||||||||||||||||| ||| ||||||||||||||||||||| | |||||||||| |||||||||||| |
|
|
| T |
26814564 |
aatatataaggaataataatcattttagtttttgaacgtgtgtaacaaataatcatagtagttcttaaatttgacggaattcatgtagtaattgttatgt |
26814465 |
T |
|
| Q |
115 |
ttgttcaatatatatatagcgatgtttgattgtgagatgaaagaaagagtgtaagcaagaataaaaatgtaagaaagataatgagtttcttttattgttt |
214 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26814464 |
ttgttcaatatatatatagcgacgtttgattgtgagatgaaagaaagagcgtaagcaagaataaaaatgtaagaaagataatgagtttcttttattgttt |
26814365 |
T |
|
| Q |
215 |
tgtttggctaaagagaaaggcaagagttgaattaagaaaataaatttcataatttaattattttttaatacatttattaactcaatctctttatatatca |
314 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26814364 |
tgtttggctgaagagaaaggcaagagttgaattaagaaaataaatttcataatttaattattttttaatacatttattaactcaatctctttatatatca |
26814265 |
T |
|
| Q |
315 |
attcggaccgccggatcggagtgatttttaaaaattatagtggaaaatgaaactctcat |
373 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26814264 |
attcggaccgccggaccggagtgatttttaaaaattatagtggaaaatgaaactctcat |
26814206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University