View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4082_high_19 (Length: 393)
Name: NF4082_high_19
Description: NF4082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4082_high_19 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 184; Significance: 2e-99; HSPs: 11)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 11 - 198
Target Start/End: Original strand, 49437821 - 49438008
Alignment:
| Q |
11 |
cacagattgacattgtttgcaaaactcttgcattcttcagaatatatattgttgacataagctcaccctgttggcctatgaaattctgaaatatgcaagt |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49437821 |
cacagattgacattgtttgcaaaactcttgcattcttcagaatatatattgttgacataagctcaccctgttggcctatgaaattctgaaatatgcaagt |
49437920 |
T |
|
| Q |
111 |
tttgaggtgtagtgaaaggcattgcggaacaaattttgggtcctcccaatttttctggacatgtagtcttctatcaatagtcgagccc |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49437921 |
tttgaggtgtagtgaaaggcattgcggaacaaattttgggtccttccaatttttctggacatgtagtcttctatcaatagtcgagccc |
49438008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 270 - 377
Target Start/End: Original strand, 49438075 - 49438182
Alignment:
| Q |
270 |
gatccctaaacttaacaaacctcatctagctcaaggttttcaagcttagggcaatgattgagcacttgcaccaacaaattccaattagagttgatagagt |
369 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49438075 |
gatccctaaacttaacaaacctcatctagctcaaggttttcaagcttagggcaatgattgagcacttgcaccaacaaattccaattagagttgatagagt |
49438174 |
T |
|
| Q |
370 |
gaagtttc |
377 |
Q |
| |
|
|||||||| |
|
|
| T |
49438175 |
gaagtttc |
49438182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 274 - 377
Target Start/End: Complemental strand, 43359814 - 43359711
Alignment:
| Q |
274 |
cctaaacttaacaaacctcatctagctcaaggttttcaagcttagggcaatgattgagcacttgcaccaacaaattccaattagagttgatagagtgaag |
373 |
Q |
| |
|
|||||||||||||||||| | ||||||| |||| ||| ||||||||| ||||||||||||| || |||||| ||||||| |||||||||||||||| |
|
|
| T |
43359814 |
cctaaacttaacaaacctgactaagctcaacattttgaaggttagggcaaggattgagcacttgtactaacaaacgccaattatagttgatagagtgaag |
43359715 |
T |
|
| Q |
374 |
tttc |
377 |
Q |
| |
|
|||| |
|
|
| T |
43359714 |
tttc |
43359711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 25 - 163
Target Start/End: Original strand, 17641140 - 17641278
Alignment:
| Q |
25 |
gtttgcaaaactcttgcattcttcagaatatatattgttgacataagctcaccctgttggcctatgaaattctgaaatatgcaagttttgaggtgtagtg |
124 |
Q |
| |
|
|||||||||||| |||||||||||||||| | | ||| | | |||||| || | |||||||||||| || ||| | ||||| |||| ||||||| || |
|
|
| T |
17641140 |
gtttgcaaaacttttgcattcttcagaatgtttcttgccaatagaagctcgccttcttggcctatgaagtttagaactttgcaaattttaaggtgtaatg |
17641239 |
T |
|
| Q |
125 |
aaaggcattgcggaacaaattttgggtcctcccaatttt |
163 |
Q |
| |
|
||| ||||||||||||||| |||||||| ||||||||| |
|
|
| T |
17641240 |
aaaaacattgcggaacaaatattgggtccacccaatttt |
17641278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 273 - 374
Target Start/End: Complemental strand, 49415840 - 49415739
Alignment:
| Q |
273 |
ccctaaacttaacaaacctcatctagctcaaggttttcaagcttagggcaatgattgagcacttgcaccaacaaattccaattagagttgatagagtgaa |
372 |
Q |
| |
|
||||||||||||||||||||| ||||||| |||| ||| | ||||| || ||||||||||| ||||||||| |||||||||||| ||||||| || |
|
|
| T |
49415840 |
ccctaaacttaacaaacctcactaagctcaacattttgaaggctggggcagtggttgagcacttgtgccaacaaatgccaattagagtttatagagtaaa |
49415741 |
T |
|
| Q |
373 |
gt |
374 |
Q |
| |
|
|| |
|
|
| T |
49415740 |
gt |
49415739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 306 - 374
Target Start/End: Original strand, 49426758 - 49426826
Alignment:
| Q |
306 |
ttttcaagcttagggcaatgattgagcacttgcaccaacaaattccaattagagttgatagagtgaagt |
374 |
Q |
| |
|
|||| ||| ||||||||||||||||||||||| ||||||||| ||| |||||||| ||||||| |||| |
|
|
| T |
49426758 |
ttttgaaggttagggcaatgattgagcacttgtgccaacaaatgccagttagagtttatagagtaaagt |
49426826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 27 - 61
Target Start/End: Complemental strand, 43362389 - 43362355
Alignment:
| Q |
27 |
ttgcaaaactcttgcattcttcagaatatatattg |
61 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| |
|
|
| T |
43362389 |
ttgcaaaactcttgcattcttcacaatatatattg |
43362355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 57
Target Start/End: Original strand, 49445332 - 49445374
Alignment:
| Q |
15 |
gattgacattgtttgcaaaactcttgcattcttcagaatatat |
57 |
Q |
| |
|
||||| ||| ||||||||||||||||||||||||| ||||||| |
|
|
| T |
49445332 |
gattgtcatggtttgcaaaactcttgcattcttcaaaatatat |
49445374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 123 - 159
Target Start/End: Complemental strand, 37419428 - 37419392
Alignment:
| Q |
123 |
tgaaaggcattgcggaacaaattttgggtcctcccaa |
159 |
Q |
| |
|
||||||||||| |||||||| |||||||||||||||| |
|
|
| T |
37419428 |
tgaaaggcattccggaacaatttttgggtcctcccaa |
37419392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 25 - 141
Target Start/End: Complemental strand, 43360060 - 43359944
Alignment:
| Q |
25 |
gtttgcaaaactcttgcattcttcagaatatatattgttgacataagctcaccctgttggcctatgaaattctgaaatatgcaagttttgaggtgtagtg |
124 |
Q |
| |
|
|||||||||||||||||||| || ||||| ||| ||| | || || |||||| ||||||||| |||| | | || | |||||||||| ||||||| || |
|
|
| T |
43360060 |
gtttgcaaaactcttgcattattaagaatgtatgttgctaactgaacctcaccatgttggcctctgaagtaccaaagtgtgcaagttttaaggtgtaatg |
43359961 |
T |
|
| Q |
125 |
aaaggcattgcggaaca |
141 |
Q |
| |
|
||| ||| |||||||| |
|
|
| T |
43359960 |
aaatgcaccgcggaaca |
43359944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 25 - 172
Target Start/End: Complemental strand, 49416089 - 49415939
Alignment:
| Q |
25 |
gtttgcaaaactcttgcattcttcagaatatatattgttgacataagctcaccctgttggcctatgaaattctgaaatatgcaagttttgaggtgtagtg |
124 |
Q |
| |
|
|||||||||||||| |||||||||| ||| ||| ||| | | |||||| || | || ||||| ||| ||| ||| | |||||||||| || |||| || |
|
|
| T |
49416089 |
gtttgcaaaactctagcattcttcaaaatgtatcttgccaatagaagctcgccttcttcgcctaagaagttcagaagtttgcaagttttaagttgtaatg |
49415990 |
T |
|
| Q |
125 |
aaaggcattgcggaacaaattttg---ggtcctcccaatttttctggacat |
172 |
Q |
| |
|
|||| | ||| ||||||||| ||| ||||||||||||||| ||||||| |
|
|
| T |
49415989 |
aaagactttgtggaacaaatattgggtggtcctcccaattttcatggacat |
49415939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University