View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4082_high_22 (Length: 359)
Name: NF4082_high_22
Description: NF4082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4082_high_22 |
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Alignment Details
Target: chr3 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 17 - 350
Target Start/End: Complemental strand, 500383 - 500050
Alignment:
| Q |
17 |
agcaagcaatgccatattatctaatcataaatcatgtttaataacgaaccatttaactcaacctggaattacaattctgtaagctttcttacttcttgcc |
116 |
Q |
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| T |
500383 |
agcaagcaatgccatattatctaatcataaatcatgtttaataacgaaccatttaactcaacctggaattacaattctgtaagctttcttacttcttgcc |
500284 |
T |
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| Q |
117 |
cttcttcataacatcagtagtgttatttgtagtagttttttcctacttgtggattccggtacatatctttcgtttttcagatgttttatggcttctattt |
216 |
Q |
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| T |
500283 |
cttcttcataatatcaggagtgtcatttgtagtagttttttcctacttgtggattccggtacatatctttcgtttttcatatgttttatggcttctattt |
500184 |
T |
|
| Q |
217 |
tctacacttttatattctacctcaatataattgtttaaacaacatgtacgaaacacttcacaaacaccatggtaccctccatttatgtatgcttcttttc |
316 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
500183 |
tctacacttttatattctaactcaatataattgtttaaacaacatgtacgaaacacttcactaacaccatggtaccctccatttatgtatgcttcttttc |
500084 |
T |
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| Q |
317 |
tgcattgcgttgtctattgtttcattgtgtatgc |
350 |
Q |
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| T |
500083 |
tgcattgcgttgtctattgtttcattgtgtatgc |
500050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 104 - 214
Target Start/End: Complemental strand, 16519746 - 16519635
Alignment:
| Q |
104 |
cttacttcttgcccttcttcataacatcagtagtgttatttgtagtagttttttcctacttgtggattccggtacatatctttcgtttt-tcagatgttt |
202 |
Q |
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| T |
16519746 |
cttacttcttgccctgcttcataatatcaggagtttcatttgtagtagttatcgcctgcttgtggattccggtatgtatctttggttttatcgtatgttt |
16519647 |
T |
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| Q |
203 |
tatggcttctat |
214 |
Q |
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|||||||||||| |
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| T |
16519646 |
tatggcttctat |
16519635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 290
Target Start/End: Complemental strand, 16519627 - 16519574
Alignment:
| Q |
237 |
ctcaatataattgtttaaacaacatgtacgaaacacttcacaaacaccatggta |
290 |
Q |
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| T |
16519627 |
ctcaatataattgtttaaacttcatgcaggaaacacttcacaagcacaatggta |
16519574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 304 - 350
Target Start/End: Complemental strand, 32329535 - 32329489
Alignment:
| Q |
304 |
tatgcttcttttctgcattgcgttgtctattgtttcattgtgtatgc |
350 |
Q |
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| T |
32329535 |
tatgcttcttttctgcattgtgttgtctattgtttcattgtgtatgc |
32329489 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 99
Target Start/End: Original strand, 11545721 - 11545750
Alignment:
| Q |
70 |
taactcaacctggaattacaattctgtaag |
99 |
Q |
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| T |
11545721 |
taactcaacctggaattacaattctgtaag |
11545750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 279
Target Start/End: Complemental strand, 50972001 - 50971903
Alignment:
| Q |
179 |
atatctttcgtttttcagatgttttatggcttctattttctacacttttatattctacctcaatataattgtttaaacaacatgtacgaaacacttcaca |
278 |
Q |
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|||||||| |||||||| ||| || |||| |||||||| ||||||||||| |||| ||||||||||||| ||||| |||| | || |||||||||| |
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| T |
50972001 |
atatctttggtttttca--tgtgttctggcctctatttttgacacttttatagtctaactcaatataattgcttaaatttcatgcaggacacacttcaca |
50971904 |
T |
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