View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4082_high_23 (Length: 353)
Name: NF4082_high_23
Description: NF4082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4082_high_23 |
 | |
|
| [»] scaffold0004 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 110; Significance: 2e-55; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 223 - 343
Target Start/End: Complemental strand, 33732334 - 33732213
Alignment:
| Q |
223 |
attgtatgaatgatagtcttaagtttggtcttggtttggtttgacttatcatcaaagaactcttgtacttgca-ttttattttaattaaaatttcttgtt |
321 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
33732334 |
attgtatgaatgatagtctcaagtttggtcttggtttggtttgacttatcatcaaagaactcttgtacttgcatttttattttaattaaaatttcttgtt |
33732235 |
T |
|
| Q |
322 |
tttgctttgtctgtttcctttg |
343 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
33732234 |
tttgctttgtctgtttcctttg |
33732213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 18 - 172
Target Start/End: Complemental strand, 33732507 - 33732341
Alignment:
| Q |
18 |
aagttaattaagaccactttcaattattaagaggtggattttaactcaacaagacttcagattttgtaacatttagttccaaaccgtcgt---------- |
107 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | |
|
|
| T |
33732507 |
aagttaattaagaccactttcaattatta-gaggtggattttaactcaacaacacttcagattttgtaacatttagttccaaaccgtcttcaaatgatga |
33732409 |
T |
|
| Q |
108 |
---caattgatcaagccattaaagttgaggttgttacgaccagccgtagtgggtggctatgatcgtag |
172 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33732408 |
aagcaattgatcaagccattaaagttgaggttgttacgaccagccgtagtgggtggctatgatcgtag |
33732341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0004 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0004
Description:
Target: scaffold0004; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 125 - 229
Target Start/End: Complemental strand, 121476 - 121373
Alignment:
| Q |
125 |
aaagttgaggttgttacgaccagccgtagtgggtggctatgatcgtagcatattggtgacttcaattttgtggtttttattttggcccttgaatgatcat |
224 |
Q |
| |
|
||||||||||||||||||||||||| ||||| ||| ||| | ||| || || |||||||||||| ||||||||||||||||| ||| |||||||| |
|
|
| T |
121476 |
aaagttgaggttgttacgaccagccatagtgagtg-ctacgtctgtaacaccttaatgacttcaatttggtggtttttattttggcacttcaatgatcac |
121378 |
T |
|
| Q |
225 |
tgtat |
229 |
Q |
| |
|
||||| |
|
|
| T |
121377 |
tgtat |
121373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University