View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4082_high_25 (Length: 320)
Name: NF4082_high_25
Description: NF4082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4082_high_25 |
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Alignment Details
Target: chr2 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 284
Target Start/End: Complemental strand, 26410685 - 26410402
Alignment:
| Q |
1 |
acgttcacagctacgcgcgttgggtttccccatgcaagctgtgagaatgtttctaaaccatgcatggctccccatgaagttacggcggttaaggtggcgg |
100 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
26410685 |
acgttcacagccacgcgcgttgggtttccccatgcaagctgtgagaatgtttctaaaccatgcatggctccccatgaagttacagcggttaaggtggcgg |
26410586 |
T |
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| Q |
101 |
tgggagttgtgattattaacgtgtaggattcgtcggtggcgtggtttagttctgtgtttgggtttgttatggttattgttagggtttgaagaggtggtag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26410585 |
tgggagttgtgattattaacgtgtaggattcgtcggtggcgtggtttagttctgtgtttgggtttgttatggttattgttagggtttgaagaggtggtag |
26410486 |
T |
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| Q |
201 |
attgtttgagaggtttgtttttggtgggattaagggatggttgtgttctgttttgatgaggtttgtgtagcgggatatggcggc |
284 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
26410485 |
attgtttgagaggtttgtttttggtgggattaagggatggttgtgttctgttttgatgaggtttgtgtagcgagatatggcggc |
26410402 |
T |
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