View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4082_high_37 (Length: 242)
Name: NF4082_high_37
Description: NF4082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4082_high_37 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 181; Significance: 6e-98; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 12 - 224
Target Start/End: Complemental strand, 31524667 - 31524455
Alignment:
| Q |
12 |
ttaaggcgttcacattattaacatcaaaatatttccacttatgatatttcaaaagattttctctttacttataaataagtacacattgttgtaatatatc |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31524667 |
ttaaggcgttcacattattaacatcaaaatatttccacttatgatatttcaaaagattttctctttacttataaataagtacacattgttgtaatatatc |
31524568 |
T |
|
| Q |
112 |
aatcacaataccatattcaaattaagcttggttataatggaaactatgttgaagatattgtttaagtttatgctgnnnnnnnncgctattgcaggtgcta |
211 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| |
|
|
| T |
31524567 |
aatcacaataccatattcaaactaagcttggttataatggaaactatgttgaagatgttgtttaagtttatgctgttttttttcgctattgcaggtgcta |
31524468 |
T |
|
| Q |
212 |
tggtagccaatgt |
224 |
Q |
| |
|
||||||||||||| |
|
|
| T |
31524467 |
tggtagccaatgt |
31524455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 12 - 224
Target Start/End: Complemental strand, 31515920 - 31515707
Alignment:
| Q |
12 |
ttaaggcgttcacattattaacatcaaaatatttccacttatgatatttcaaaagattttctctttacttataaataagtacacattgttgtaatatatc |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
31515920 |
ttaaggcgttcacattattaacatcaaaatatttccacttatgatatttcaaaagattttctctttatttataaataagtacacattgttgtaatatatc |
31515821 |
T |
|
| Q |
112 |
aatcacaataccatattcaaattaagcttggttataatggaaactatgttgaagatattgtttaagtttatgctg-nnnnnnnncgctattgcaggtgct |
210 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
31515820 |
aatcacaataccatattcaaactaagcttggttataatggaaactatgttgaagatattgtttaagtttatgctgtttttttttcgctattgcaggtgct |
31515721 |
T |
|
| Q |
211 |
atggtagccaatgt |
224 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
31515720 |
atggtagccaatgt |
31515707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 12 - 224
Target Start/End: Complemental strand, 31522320 - 31522109
Alignment:
| Q |
12 |
ttaaggcgttcacattattaacatcaaaatatttccacttatgatatttcaaaagattttctctttacttataaataagtacacattgttgtaatatatc |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
31522320 |
ttaaggcgttcacattattaacatcaaaatatttctagttatgatatttcaaaagattttctctttgcttataaataagtacacattgttgtaatatatc |
31522221 |
T |
|
| Q |
112 |
aatcacaataccatattcaaattaagcttggttataatggaaactatgttgaagatattgtttaagtttatgctgnnnnnnnncgctattgcaggtgcta |
211 |
Q |
| |
|
| ||||||||||| ||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
31522220 |
actcacaatacca-attcaaactaatcttggttataatggaaactatgttgaagatattgtttaagtttatgctgttttttctcgctattgcaggtgcta |
31522122 |
T |
|
| Q |
212 |
tggtagccaatgt |
224 |
Q |
| |
|
||||||||||||| |
|
|
| T |
31522121 |
tggtagccaatgt |
31522109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University