View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4082_high_41 (Length: 235)
Name: NF4082_high_41
Description: NF4082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4082_high_41 |
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Alignment Details
Target: chr3 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 52037455 - 52037662
Alignment:
| Q |
1 |
aattattcaaaaatacattccttnnnnnnnnnttattcaaaatacacgtttaaatcaaaagttcggttgtatagttgtatgtgttaaaatccattttatt |
100 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52037455 |
aattattcaaaaatacattccttaaaaaaaaaatattcaaaatacacgtttaaatcaaaagttcggttgtatagttgtatgtgttaaaatccattttatt |
52037554 |
T |
|
| Q |
101 |
tggacttatgaccaagcaagtgttaatgcacca-----ttcttttcnnnnnnnngaaagagttaatgcaccattctaaatagtaaattttacaatatttg |
195 |
Q |
| |
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||||||||||||||||||||||||||||||||| || |||| |||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
52037555 |
tggacttatgaccaagcaagtgttaatgcaccatttttttgttttttttgttttgaaagagttaatgcaccattctaaatagtaaattttacaatatttg |
52037654 |
T |
|
| Q |
196 |
ttgtaatt |
203 |
Q |
| |
|
|||||||| |
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|
| T |
52037655 |
ttgtaatt |
52037662 |
T |
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