View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4082_high_8 (Length: 515)
Name: NF4082_high_8
Description: NF4082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4082_high_8 |
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Alignment Details
Target: chr2 (Bit Score: 428; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 24 - 500
Target Start/End: Complemental strand, 37136513 - 37136037
Alignment:
| Q |
24 |
aatgatgaagaagataaaggttgatgttgtagttgcaatagtttatcattgtatgcaatagcttctgcttggatttctggaggataaagaggtaagccgg |
123 |
Q |
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| T |
37136513 |
aatgatgaagaagataaaggttgatgttgtagttgcaatagtttatcattgtatgcaatagcttctgcttggatttctggaggataaagaggtaagccgg |
37136414 |
T |
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| Q |
124 |
ctctttgacaccttttcattcttgtgttccaaaagtttttgatttcgttatctgttcttccgggcaactgaaaaaataacaaaacattttcaggtgctcg |
223 |
Q |
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| T |
37136413 |
ctctttgacgccttttcattcttgtgttccaaaagtttttgatttcgttatctgttcttccgggcaactgaaaaaacaacaaaacattttcaggtgctcg |
37136314 |
T |
|
| Q |
224 |
gaaaaagannnnnnnataaacaaatgttaatagttaatttgtgtgcagtaaagatcgaattgaactcttaatactttatcgagaaacaataaacaagttc |
323 |
Q |
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| T |
37136313 |
gagaaagatttttttataaacaaatgttaatagttaatttgtttgcagtaaagatcgaattgaactcttaatactttaccgagaaacaataaacaagttc |
37136214 |
T |
|
| Q |
324 |
taccaagcaaacttctcaacaaataatttgtatcaagcaaagtacacaaaagacataaagatgagtattttagccttaaatgagagcttttagaaagtag |
423 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
37136213 |
taccaagcaaacttctcaacaaataatttgtatcaagcaaagtacacaaaagacataaagatgagtattttaaccttaaatgagagcttttagaaagtag |
37136114 |
T |
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| Q |
424 |
ggcacatatttgaaagaaagaaacaaaaatggcaatttgatattcagacaatgattgaggtcagcttcttgatgatg |
500 |
Q |
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| T |
37136113 |
ggcacatatttgaaagaaacaaacaaaaatggcaatttgatattcagacaatgattgaggtcagcttcttgatgatg |
37136037 |
T |
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