View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4082_low_10 (Length: 462)
Name: NF4082_low_10
Description: NF4082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4082_low_10 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 290; Significance: 1e-162; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 42 - 448
Target Start/End: Complemental strand, 45521349 - 45520942
Alignment:
| Q |
42 |
cctgacagaactcaatactctcttctttttcggacaataaagtttaannnnnnnngtggcttttaatttttgtgattaatttatcatttctcaaaaagaa |
141 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||||||||||||||||||||||| |||| |
|
|
| T |
45521349 |
cctgacagatctcaatactctcttctttttcggacaataaagtttaattttttttgttgcttttaatttctgtgattaatttatcatttctcaaagagaa |
45521250 |
T |
|
| Q |
142 |
agagtaaccagagtaaaataattgtttctcgattgcatgccttcaaggaaaaaatggaagnnnnnnnnngagaagaaatttgattttgggtggttgtagt |
241 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
45521249 |
agagtaaccagagtaaaataattgtttgtcgattgcatgccttcaagcaaaaaatggaagaaaaaaaa-gagaagaaatttgattttgggtggttgtagt |
45521151 |
T |
|
| Q |
242 |
ttgtgtagttgtgattgaaattttgaaactttgggttgaatggaaggagttaaaacacaagtgtggtgtatggtggtcgtagttgatgataaaagttacc |
341 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
45521150 |
ttgtgtagttgtgattgaaattttgaaactttgggttgaatgaaaggagttaaaacacaagtgtggtgtatggtggttgtagttgatgataaaagttacc |
45521051 |
T |
|
| Q |
342 |
caactgaatgttaatgcttccatagaaacaaataaaaatcaaaatataaac--tgacacgtaaatgaaagtctcacgcatgttaattacataaagggtga |
439 |
Q |
| |
|
||| |||||||||||||||||||||||||| |||||||||||||||||||| |||||| |||||||||| |||||||||||||||||| |||||||||| |
|
|
| T |
45521050 |
caattgaatgttaatgcttccatagaaacagataaaaatcaaaatataaacagtgacacataaatgaaagcctcacgcatgttaattacgtaaagggtga |
45520951 |
T |
|
| Q |
440 |
gacaaatga |
448 |
Q |
| |
|
||||||||| |
|
|
| T |
45520950 |
gacaaatga |
45520942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 211 - 448
Target Start/End: Complemental strand, 10566734 - 10566497
Alignment:
| Q |
211 |
gagaagaaatttgattttgggtggttgtagtttgtgtagttgtgattgaaattttgaaactttgggttgaatggaaggagttaaaacacaagtgtggtgt |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10566734 |
gagaagaaatttgattttgggtggttgtagtttgtgtagttgtgattgaaattttgaaactttgggttgaatggaaggagttaaaacacaagtgtggtgt |
10566635 |
T |
|
| Q |
311 |
atggtggtcgtagttgatgataaaagttacccaactgaatgttaatgcttccatagaaacaaataaaaatcaaaatataaactgacacgtaaatgaaagt |
410 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
10566634 |
atggtggttgtagttgatgataaaagttacccaactgaatgttaatgcttctatagaaacaaataaaaatcaaaatataatttgacacgtaaatgaaagt |
10566535 |
T |
|
| Q |
411 |
ctcacgcatgttaattacataaagggtgagacaaatga |
448 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10566534 |
ctcacgcatgttaattacataaagggtgagacaaatga |
10566497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 44 - 160
Target Start/End: Complemental strand, 10566873 - 10566757
Alignment:
| Q |
44 |
tgacagaactcaatactctcttctttttcggacaataaagtttaannnnnnnngtggcttttaatttttgtgattaatttatcatttctcaaaaagaaag |
143 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||| || || |||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
10566873 |
tgacagatctcaatactctcttctttttcggacaataaagtttaattttttttgttgcgtttaatttctgtgattaatttatcatttctcaaaaagaaag |
10566774 |
T |
|
| Q |
144 |
agtaaccagagtaaaat |
160 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
10566773 |
agtaaccagagtaaaat |
10566757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 121; Significance: 8e-62; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 147 - 453
Target Start/End: Original strand, 52727974 - 52728275
Alignment:
| Q |
147 |
aaccagagtaaaataattgtttctcgattgcatgccttcaaggaaaaaatggaagnnnnnnnnngagaagaaatttgattttgggtggttgtagtttgtg |
246 |
Q |
| |
|
|||||||||||||||||||||| || |||| ||||||||||| ||||| ||||| ||||| | ||||||||| |||||||||||||||||| |
|
|
| T |
52727974 |
aaccagagtaaaataattgtttgtcaattgaatgccttcaagcaaaaattggaa-----aaaaggagaaaatatttgatttagggtggttgtagtttgtg |
52728068 |
T |
|
| Q |
247 |
tagttgtgattgaaattttgaaactttgggttgaatggaaggagttaaaacacaagtgtggtgt-atggtggtcgtagttgatgataaaagttacccaac |
345 |
Q |
| |
|
|||||||||||||||||||||| ||| ||| ||||||||||||||||||||||||||||||||| |||||||| ||| |||||| | ||| ||| ||||| |
|
|
| T |
52728069 |
tagttgtgattgaaattttgaagcttgggggtgaatggaaggagttaaaacacaagtgtggtgtgatggtggttgtatttgatgttgaaaatta-ccaac |
52728167 |
T |
|
| Q |
346 |
tgaatgttaatgcttccatagaaacaaataaaaatcaaaatataaac--tgacacgtaaatgaaagtctcacgcatgttaattacataaagggtgagaca |
443 |
Q |
| |
|
|||||| | ||||| |||||||||||||||||||||||||||| || ||| | |||||||||||||| ||||||||||||||||| || |||||| |
|
|
| T |
52728168 |
agaatgtaagtgctttcatagaaacaaataaaaatcaaaatatacacagtgagaaagaaatgaaagtctca--catgttaattacataaaaggagagaca |
52728265 |
T |
|
| Q |
444 |
aatgatgatg |
453 |
Q |
| |
|
| ||||||| |
|
|
| T |
52728266 |
acagatgatg |
52728275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University