View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4082_low_14 (Length: 430)
Name: NF4082_low_14
Description: NF4082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4082_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 351; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 19 - 414
Target Start/End: Original strand, 13888905 - 13889300
Alignment:
| Q |
19 |
gatacaccgttagtgcaaaacgttataacattgtcgactaatcacaataagaattaaatcattgaaagtgtnnnnnnntctttagaatgacgatgtataa |
118 |
Q |
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| T |
13888905 |
gatacaccgttagtgcaaaacgttataacattgtcgactaatcacaataagaattaaatcattgaaagtgtaaaaaaatctttagactgacgaggtataa |
13889004 |
T |
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| Q |
119 |
gaattaaatcattctaaaaatttcaattcaactcaataaacatgcacatcacaatgtcaaatgtactatctattgaagcgaaaagcacaaaacctggatt |
218 |
Q |
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| T |
13889005 |
gaattaaatcattctaaaaatttcaattcaacgcaataaacatgcacatcacaatgtcaaatgtactatctattgaagcgaaaagcacaaaacctggatt |
13889104 |
T |
|
| Q |
219 |
aacttttaatggtaagggagaaccattcaatgtttgatttcctccttcaatgcgcaaagagaagtttccagctttggtcacgacaaactcaatgacaata |
318 |
Q |
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| T |
13889105 |
aacttttaatggcaagggagaaccattcaatgtttgatttcctccttcaatgcgcaaagagaagtttccagctttggtcacgacaaactcaatgacaata |
13889204 |
T |
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| Q |
319 |
taatcaaactcattccatcccatgttggagatatcgggctcgcttgcaatagaaccattttcactcaacatagacaacttaaaatcaggcatatag |
414 |
Q |
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| T |
13889205 |
taatcaaactcattccatcccatgttggagatatcgggctcgcttgcaatagaaccattttcactcaacatagacagtttaaaatcaggcatatag |
13889300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 19 - 414
Target Start/End: Original strand, 14029030 - 14029425
Alignment:
| Q |
19 |
gatacaccgttagtgcaaaacgttataacattgtcgactaatcacaataagaattaaatcattgaaagtgtnnnnnnntctttagaatgacgatgtataa |
118 |
Q |
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| T |
14029030 |
gatacaccgttagtgcaaaacgttataacattgtcgactaatcacaataagaattaaatcattgaaagtgtaaaaaaatctttagactgacgaggtataa |
14029129 |
T |
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| Q |
119 |
gaattaaatcattctaaaaatttcaattcaactcaataaacatgcacatcacaatgtcaaatgtactatctattgaagcgaaaagcacaaaacctggatt |
218 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14029130 |
gaattaaatcattctaaaaatttcaattcaacgcaataaacatgcacatcacaatgtcaaatgtactatctattgaagcgaaaagcacaaaacctggatt |
14029229 |
T |
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| Q |
219 |
aacttttaatggtaagggagaaccattcaatgtttgatttcctccttcaatgcgcaaagagaagtttccagctttggtcacgacaaactcaatgacaata |
318 |
Q |
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| T |
14029230 |
aacttttaatggcaagggagaaccattcaatgtttgatttcctccttcaatgcgcaaagagaagtttccagctttggtcacgacaaactcaatgacaata |
14029329 |
T |
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| Q |
319 |
taatcaaactcattccatcccatgttggagatatcgggctcgcttgcaatagaaccattttcactcaacatagacaacttaaaatcaggcatatag |
414 |
Q |
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| T |
14029330 |
taatcaaactcattccatcccatgttggagatatcgggctcgcttgcaatagaaccattttcactcaacatagacagtttaaaatcaggcatatag |
14029425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 159; Significance: 2e-84; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 110 - 413
Target Start/End: Original strand, 7690071 - 7690362
Alignment:
| Q |
110 |
gatgtataagaattaaatcattctaaaaatttcaattcaactcaataaacatgcacatcacaatgtcaaatgtactatctattgaagcgaaaagcacaaa |
209 |
Q |
| |
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||||||||||||||||||| |||||| || ||||||||||| ||| |||||||||||||||||||| ||||||||| || |||||||| |
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| T |
7690071 |
gatgtataagaattaaatccttctaagaaattcaattcaacacaaaaaacatgcacatcacaatgtg------------tattgaagcaaatagcacaaa |
7690158 |
T |
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| Q |
210 |
acctggattaacttttaatggtaagggagaaccattcaatgtttgatttcctccttcaatgcgcaaagagaagtttccagctttggtcacgacaaactca |
309 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| |||||||||||| |||||||| | || |||||| |
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| T |
7690159 |
acctggattcacttttaatggtaagggagaaccattcaatgtttgatttcctccttctatgtgcatagagaagtttccggctttggttgctacgaactca |
7690258 |
T |
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| Q |
310 |
atgacaatataatcaaactcattccatcccatgttggagatatcgggctcgcttgcaatagaaccattttcactcaacatagacaacttaaaatcaggca |
409 |
Q |
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||||| |||||||||||||||||||| |||||||| |||||||| ||||| |||||||||| |||||||| ||||||||||| |||||||||||||||| |
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| T |
7690259 |
atgactatataatcaaactcattccaccccatgttagagatatcaggctcagttgcaatagagccattttcgctcaacatagataacttaaaatcaggca |
7690358 |
T |
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