View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4082_low_17 (Length: 402)
Name: NF4082_low_17
Description: NF4082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4082_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 153; Significance: 6e-81; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 16169207 - 16169410
Alignment:
| Q |
1 |
tacacttcgaatgctcatgtggggaacatatatttggacaatcaacgtcatgtttacagttattataaagtaagaatctaccaaatccttcaattgcaaa |
100 |
Q |
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| T |
16169207 |
tacacttcgaatgttcatgtggggaacatatatttggacaatcaacatcctgtttacagttattataaagtaagaatctaccaaatccttcaattgcaaa |
16169306 |
T |
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| Q |
101 |
aagtaaatatataagtaggatgataacatacaaaagttttagaattgtaaccata-ttttttctcacttgcatgtaat--ttgaaaaattgtttgatcac |
197 |
Q |
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| T |
16169307 |
aagtacatatataaataggatgataacatacaaaagttttagagttgtaaccatatttttttctcacttgcatgtaatcaatgaaaaattgtttgatcat |
16169406 |
T |
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| Q |
198 |
ttta |
201 |
Q |
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|||| |
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| T |
16169407 |
ttta |
16169410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 279 - 387
Target Start/End: Original strand, 16169488 - 16169603
Alignment:
| Q |
279 |
tatattcatgtgtcatatttgtcctttgctcactaaatatataatctgactcttttttattaaatattgatctcttaaatttattaaa-------cacta |
371 |
Q |
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| T |
16169488 |
tataatcatgtgtcatatttgtcctttgctcactaaatatataacctgactcatttttattaaatattgatctcttaaatttattaaagatcttgcacta |
16169587 |
T |
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| Q |
372 |
aaatatagttcttttt |
387 |
Q |
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| T |
16169588 |
aaatatagttcttttt |
16169603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 32 - 165
Target Start/End: Complemental strand, 29758049 - 29757913
Alignment:
| Q |
32 |
atttggacaatcaacgtcatgtttacagttattataaagtaagaatcta---ccaaatccttcaattgcaaaaagtaaatatataagtaggatgataaca |
128 |
Q |
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| T |
29758049 |
atttggacattcagtgtcatttttgcagttattataaattaagaatctatggccaaaactttctattacaaaaagtgaataaataaatagcatgataaca |
29757950 |
T |
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| Q |
129 |
tacaaaagttttagaattgtaaccatattttttctca |
165 |
Q |
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| T |
29757949 |
tacacaaacttgagaattgtagccatgctttttctca |
29757913 |
T |
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