View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4082_low_18 (Length: 399)
Name: NF4082_low_18
Description: NF4082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4082_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 18 - 390
Target Start/End: Complemental strand, 33237936 - 33237563
Alignment:
| Q |
18 |
attatctccgttgcgttggatcagaagcttcaagaaatctataatatctttaggattggaaattgctttcttgcgcttcaagtattcgtcaacagaatct |
117 |
Q |
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| T |
33237936 |
attatctccgttgcgttggatcagaagcttcaagaaatctataatatctttaggattggaaattgctttcttgcgcttcaagtattcttcaacagaatct |
33237837 |
T |
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| Q |
118 |
gcaacatatatgaacatagcatttaactctgttcnnnnnnntgactttgcctcctaacatgtattcnnnnnnnnnnccaccaggtgtg-cacctatttgc |
216 |
Q |
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| T |
33237836 |
gcaacatatatgaacatagcatttaactctattcaaaaaaatgactttgcctcctaacatgtattcaaaaaaataaccaccaggtgtgtcacctatttgc |
33237737 |
T |
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| Q |
217 |
catttgcttagtttcagatgttccttcaacttagaatcaacaaaattaagtttttctttaaaatctgatagtgtatagtccctgaaacaagaacagaaaa |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33237736 |
catttgcttagtttcagatgttccttcaacttagaatcaacaaaattaagtttttctttaaaatctgatagtgtatagtccctgaaacaagaacagaaaa |
33237637 |
T |
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| Q |
317 |
aagaattgctatacaattaatacaaatgtatgttaaagattacatgtaaaacaatttaatttcttcgttcatct |
390 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33237636 |
aagaattgctatagaattaatacaaatgtatgttaaagattacatgtaaaacaatttaatttcttcgttcatct |
33237563 |
T |
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Target: chr8 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 229 - 297
Target Start/End: Complemental strand, 26376748 - 26376680
Alignment:
| Q |
229 |
ttcagatgttccttcaacttagaatcaacaaaattaagtttttctttaaaatctgatagtgtatagtcc |
297 |
Q |
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|||||| ||||||||||||||||||||||||||| |||||| |||||| |||||||||||||||||||| |
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| T |
26376748 |
ttcagaggttccttcaacttagaatcaacaaaataaagtttgtctttagaatctgatagtgtatagtcc |
26376680 |
T |
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