View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4082_low_2 (Length: 705)
Name: NF4082_low_2
Description: NF4082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4082_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 596; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 596; E-Value: 0
Query Start/End: Original strand, 73 - 696
Target Start/End: Complemental strand, 44866144 - 44865521
Alignment:
| Q |
73 |
gtgagcctcactgtctgtgcaaaactatgaatagccgtggtttgcgaaagtatatacttatgcatctatctgaaacgccgtcgcttaaggaaaaaatccc |
172 |
Q |
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| T |
44866144 |
gtgagcctcactgtctgtgcaaaactatgaatagccgtggtttgcgaaagtatatacttatgcatctatctgaaacgccgtcgcttgaggaaaaaatccc |
44866045 |
T |
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| Q |
173 |
ggtggcgctgaaaaaggcgccggaaccggcaaaattggtgtttgaatgcattggtagattttaccttcaaggaagcaaagcctatacaacaaactcaccg |
272 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44866044 |
ggtggcactgaaaaaggcgccggaaccggcaaaattggtgtttgaatgcattggtagattttaccttcaaggaagcaaagcctatacaacaaactcaccg |
44865945 |
T |
|
| Q |
273 |
atgattactgcaaggcaagcttcaattttggttttggaatactatctgatgtctggttgtgttgaaagtgaagcaaaaatggaacgtaaactgaaggcag |
372 |
Q |
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| T |
44865944 |
atgattactgcaaggcaagcttcaattttggttttggaatactatctgatgtctggctgtgttgaaagtgaagcaaaaatggaacgtaaactgaaggcag |
44865845 |
T |
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| Q |
373 |
aagctgcagatgcagcgggtgcgtggagaaagagacttgttgttgaaggtggtgtggctatggcaagtgaaatggatgccagaggtttgactctttttct |
472 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44865844 |
aagctgcagatgcagcgggtgcgtggaggaagagacttgttgttgaaggtggtgtggctatggcaagtgaaatggatgccagaggtttgactctttttct |
44865745 |
T |
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| Q |
473 |
tgcgtgctttgggattcatggtgtttttaggaatgaggatattgcgaacttggttcgtttgagcaaacctggagaaatctcgcaccttcttcgcgtttcc |
572 |
Q |
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| T |
44865744 |
tgcgtgctttgggattcatggtgtttttaggaatgaggatattgcgaacttggttcgtttgagcaaacctggagaaatctcgcaccttcttcgcgtttcc |
44865645 |
T |
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| Q |
573 |
gggagcctttctagcaggtgttcaggtatgtattgtatacatgcctttgggaatttaggacatataatactcatggttatgcttgatcattttactttac |
672 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
44865644 |
gggagcctttctagcaggtgttcaggtatgtattgtatacatgcctttgggaatttaggatatataatactcatggttatgcttgatcattttactttac |
44865545 |
T |
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| Q |
673 |
acttttactgtataatttgcgatt |
696 |
Q |
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|||||||||||| |||||| |||| |
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| T |
44865544 |
acttttactgtacaatttgtgatt |
44865521 |
T |
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