View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4082_low_27 (Length: 347)
Name: NF4082_low_27
Description: NF4082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4082_low_27 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 15 - 333
Target Start/End: Complemental strand, 28711085 - 28710760
Alignment:
| Q |
15 |
atgaacaaggaaactagaagtgtgaaacttgaatcaaaagcattgctatagtttgtaccgcgggttttaaatcagacgcagtcttcgcattatcggccat |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||| || |||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
28711085 |
atgaacaaggaaactagaagtgtgaaacttgaatcaaaagtattgctaaaggttgtaccgcgggttttaaatcagacgcagtcttcgcattatccgccat |
28710986 |
T |
|
| Q |
115 |
tttacgaatttcataaaccagttctccatgcatatgcatttgctgtcatagagaataatattaaattaaataactacaatatagagaaagtaactaaaat |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| |
|
|
| T |
28710985 |
tttacgaatttcataaaccagttctccatgcatatgcatttgctgtcatagagaataatattaaattaaataactaaaatatagagaaagattctaaaat |
28710886 |
T |
|
| Q |
215 |
tgtttgaataaataaccaatagaatttccagcaaaatggaaaaa------caaacacacgt-aacttgccttaggttttccgcaatattcatatatcatg |
307 |
Q |
| |
|
||| | |||| | ||||||||| |||||||| |||| ||||| | |||||| | ||||||||||||||||||| |||||||||| ||||| |
|
|
| T |
28710885 |
tgtatcaatataaaaccaatagcatttccagaaaaaaaaaaaaaaactctgacacacacataaacttgccttaggttttccacaatattcatgaatcata |
28710786 |
T |
|
| Q |
308 |
cgactcacgcggcgtggagccatttg |
333 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
28710785 |
cgactcacgcggcgtggagccatttg |
28710760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 57
Target Start/End: Complemental strand, 34106771 - 34106729
Alignment:
| Q |
15 |
atgaacaaggaaactagaagtgtgaaacttgaatcaaaagcat |
57 |
Q |
| |
|
|||||||||||||||| || | ||||||||||||||||||||| |
|
|
| T |
34106771 |
atgaacaaggaaactaaaattctgaaacttgaatcaaaagcat |
34106729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 15 - 62
Target Start/End: Original strand, 38648649 - 38648696
Alignment:
| Q |
15 |
atgaacaaggaaactagaagtgtgaaacttgaatcaaaagcattgcta |
62 |
Q |
| |
|
|||||||| ||||||| || |||||||||||||||||||||||||||| |
|
|
| T |
38648649 |
atgaacaaagaaactaaaattgtgaaacttgaatcaaaagcattgcta |
38648696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 24 - 60
Target Start/End: Original strand, 48430878 - 48430914
Alignment:
| Q |
24 |
gaaactagaagtgtgaaacttgaatcaaaagcattgc |
60 |
Q |
| |
|
||||||| || |||||||||||||||||||||||||| |
|
|
| T |
48430878 |
gaaactaaaattgtgaaacttgaatcaaaagcattgc |
48430914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University