View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4082_low_28 (Length: 338)
Name: NF4082_low_28
Description: NF4082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4082_low_28 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 305; Significance: 1e-172; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 305; E-Value: 1e-172
Query Start/End: Original strand, 10 - 338
Target Start/End: Complemental strand, 1481452 - 1481124
Alignment:
| Q |
10 |
aacaatatttaaaaacaaaaagaatagatgatatagttacatgattaccatttctttcctatttttgctaatacatgtttaacatttctaaagatacttt |
109 |
Q |
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| T |
1481452 |
aacaacatttaaaaacaaaaagaatagatgatattgttacatgattaccatttcttttctttttttgctaatacatgtttaacatttctaaagatacttt |
1481353 |
T |
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| Q |
110 |
taaattaaaataatataggataagttcactcaatcaaacttatatcaaagtaatatagaatttattagttcataaattagaattttattaataacttcga |
209 |
Q |
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| T |
1481352 |
taaattaaaataatataggataagttcactcaatcaaacttatatcaaagtaatatagaatttattagttcataaattagaattttattaatatcttcga |
1481253 |
T |
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| Q |
210 |
aactcggcatcgcattgagaatattctacctagtttctatgaagggttgtagacattccacactatcatttgccataagatcacatacaaagtattgagt |
309 |
Q |
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| T |
1481252 |
aactcggcatcgcattgagaatattttacctagtttctatgaagggttgtagacattccacactatcatttgccataagatcacatacaaagtattgagt |
1481153 |
T |
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| Q |
310 |
ttagtacataggaacaactccaatggagc |
338 |
Q |
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| T |
1481152 |
ttagtacataggaacaactccaatggagc |
1481124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 247 - 302
Target Start/End: Complemental strand, 7314435 - 7314380
Alignment:
| Q |
247 |
tatgaagggttgtagacattccacactatcatttgccataagatcacatacaaagt |
302 |
Q |
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| T |
7314435 |
tatgaagggttgtagaaattccacactatcatttgctcaaagatcacatacaaagt |
7314380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 131 - 165
Target Start/End: Complemental strand, 7314550 - 7314516
Alignment:
| Q |
131 |
aagttcactcaatcaaacttatatcaaagtaatat |
165 |
Q |
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| T |
7314550 |
aagttcactcaatcaaacttatataaaagtaatat |
7314516 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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