View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4082_low_29 (Length: 328)
Name: NF4082_low_29
Description: NF4082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4082_low_29 |
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Alignment Details
Target: chr3 (Bit Score: 256; Significance: 1e-142; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 17 - 313
Target Start/End: Complemental strand, 8137404 - 8137108
Alignment:
| Q |
17 |
atgaacctggtaagcagaagaaccaattccaaagagaaaatcatcaggaaaaaggctcctattgaatgaagcatattgacttggttctacnnnnnnnggt |
116 |
Q |
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| T |
8137404 |
atgaacctggtaagcagaagaaccaattccaaagagaaaatcatcaggaaaaaggctcctattgaatgaagcatattgacttggttctactttttttggt |
8137305 |
T |
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| Q |
117 |
tcagttccagtgacaacagccaaaagggtagctatagaaaaaagatagagaagggaaggagctatagctcccatggctgaaaattgtgatgtctaaagat |
216 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||| |
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| T |
8137304 |
tcagttccagtgacaacagccaaaagggtagctagagaaaaaagatagagaagggaaggacctatagctcccatggctgcaaattgtgatgtctaaagat |
8137205 |
T |
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| Q |
217 |
gaagtagtgacatctatataaatgcaagaaaatgggccatgattttttaatgagttagttatgtcgtttaatcatcacaatacatattcaccctatg |
313 |
Q |
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| T |
8137204 |
gaagtagtgacatctatataaatgcaagaaaatgggccatgattttttaatgggttagttatgtcgtttaatcatcacaatacatattgaccctatg |
8137108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 17 - 195
Target Start/End: Complemental strand, 8162064 - 8161883
Alignment:
| Q |
17 |
atgaacctggtaagcagaagaaccaattccaaagagaaaatcatcaggaaaaaggctcctattgaatga---agcatattgacttggttctacnnnnnnn |
113 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||| |||||||||| |||| |||||||| |||||| |||||||| | || |
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| T |
8162064 |
atgaacctggtaagcagaagaaccgattccaaagagaaaatcagaaggaaaaagggtcctgttgaatgaagcagcatagtgacttggatgcacatgttgt |
8161965 |
T |
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| Q |
114 |
ggttcagttccagtgacaacagccaaaagggtagctatagaaaaaagatagagaagggaaggagctatagctcccatggctg |
195 |
Q |
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| T |
8161964 |
gatgcagttccagtgacaacagccaaaagtgtagccagagaaaaaagatagaggaggaaatgacttatagctttcatggctg |
8161883 |
T |
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