View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4082_low_30 (Length: 326)
Name: NF4082_low_30
Description: NF4082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4082_low_30 |
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Alignment Details
Target: chr8 (Bit Score: 148; Significance: 4e-78; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 127 - 298
Target Start/End: Original strand, 27848589 - 27848760
Alignment:
| Q |
127 |
ggtggatatgttcctggtggaccgggtgaaggaggtggtgatattcctggtggaggaggcgatgtaggtggtgggtatgttcctggtggaccgggcaaag |
226 |
Q |
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| T |
27848589 |
ggtggacatgttcctggtggaccgggtgaaggaggtggtgatattcctggtggaggaggtgatgtaggtggtgggtatgttcctggtggaccgggcgaag |
27848688 |
T |
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| Q |
227 |
gaggtggtgatgttcctggtggaggaggcaaaggaggcgttgggtatgttcctgttagacctggtgaaggaa |
298 |
Q |
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| T |
27848689 |
gaggtggtgatgttcctggtgaaggagggaaaggaggcgttgggtatgttcctgttggacctggtgaaggaa |
27848760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 20 - 249
Target Start/End: Original strand, 27848383 - 27848609
Alignment:
| Q |
20 |
acccgggtgtaggaggtggtggatttgttcctggggtaggaggcggtgaatgtgtccctggttacccgtgtgaaggaagtggtggacatgttcctggtgg |
119 |
Q |
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| T |
27848383 |
acccgggtgtaggaggtggtggatttgttcctggggtaggaggcggtgaatgtgtcccaggttacccgtgtgaaggaagtggtggacatgttcctggtgg |
27848482 |
T |
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| Q |
120 |
agaagacggtggatatgttcctggtggaccgggtgaaggaggtggtg---atattcctggtggaggaggcgatgtaggtggtgggtatgttcctggtgga |
216 |
Q |
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| T |
27848483 |
agaagacggtggatatgttcctggtggaccgggtgaaggagttggtggacatgttcctggtggaggagac---------ggtggatatgttcctggtgga |
27848573 |
T |
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| Q |
217 |
ccgggcaaaggaggtggtg---atgttcctggtgga |
249 |
Q |
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| T |
27848574 |
ccgggtgaaggagttggtggacatgttcctggtgga |
27848609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 127 - 254
Target Start/End: Original strand, 27848658 - 27848785
Alignment:
| Q |
127 |
ggtggatatgttcctggtggaccgggtgaaggaggtggtgatattcctggtggaggaggcgatgtaggtggtgggtatgttcctggtggaccgggcaaag |
226 |
Q |
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||||| |||||||||||||||||||| ||||||||||||||| ||||||||| |||||| | | ||| | |||||||||||||| |||||| || ||| |
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| T |
27848658 |
ggtgggtatgttcctggtggaccgggcgaaggaggtggtgatgttcctggtgaaggagggaaaggaggcgttgggtatgttcctgttggacctggtgaag |
27848757 |
T |
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| Q |
227 |
gaggtggtgatgttcctggtggaggagg |
254 |
Q |
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| T |
27848758 |
gaagtggtgatggtggaggtggaggagg |
27848785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 196 - 253
Target Start/End: Original strand, 27848490 - 27848550
Alignment:
| Q |
196 |
ggtgggtatgttcctggtggaccgggcaaaggaggtggtg---atgttcctggtggaggag |
253 |
Q |
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| T |
27848490 |
ggtggatatgttcctggtggaccgggtgaaggagttggtggacatgttcctggtggaggag |
27848550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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