View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4082_low_32 (Length: 319)
Name: NF4082_low_32
Description: NF4082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4082_low_32 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
| [»] scaffold0127 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 1 - 319
Target Start/End: Complemental strand, 15049773 - 15049449
Alignment:
| Q |
1 |
cccaccaaaaactagctcgaaaatagccataaatggaacatatctgaacaccactaaaacaaaccatggaaacgtatagaggagatgaagaaaccatcaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15049773 |
cccaccaaaaactagctcgaaaatagccataaatggaacatatctgaaaaccactaaaacaaaccatggaaacgtatagaggagatgaagaaaccatcaa |
15049674 |
T |
|
| Q |
101 |
aaaccaccttgaaaaccaccacaa------gctacgatattggaaaacccagccgtcggagtacccaccggaaaaaacaagaacgcaccaagaacacatt |
194 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15049673 |
aaaccaccttgaaaaccaccacaaccacaagctacgatattggaaaacgcagccgtcggagtacccaccggaaaaaacaagaacgcaccaagaacacatt |
15049574 |
T |
|
| Q |
195 |
ctttctgcgaaatcagcgccgagagaacagtgactagaggtgatgcggatggttgttccatcttcgcaccttcagccaccacggccgtttacattgtgaa |
294 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
15049573 |
ctttctgcgaaatcagcgccgagagaacagtgactagaggtgatgcggatggttgttccatcttcgcaccttcagccaccaccgccgtttacattgtgaa |
15049474 |
T |
|
| Q |
295 |
ccaaaggaatttggaaagaaggggc |
319 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
15049473 |
ccaaaggaatttggaaagaaggggc |
15049449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 118; Significance: 3e-60; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 1 - 317
Target Start/End: Complemental strand, 26841718 - 26841401
Alignment:
| Q |
1 |
cccaccaaaaactagctcgaaaatagccataaatggaacatatctgaacaccactaaaacaaaccatggaaac-gtatagaggagatgaagaaaccatca |
99 |
Q |
| |
|
|||||||||||||| |||||||| ||||||||| ||||||||| ||||||||| |||||||||||| |||| ||| |||||||||||||| |||| || |
|
|
| T |
26841718 |
cccaccaaaaactatctcgaaaacagccataaaaggaacatat---aacaccactgaaacaaaccatgaaaaccgtacagaggagatgaagagaccacca |
26841622 |
T |
|
| Q |
100 |
aaaaccaccttgaaaaccaccacaa------gctacgatattggaaaac-ccagccgtcggagtacccaccggaaaaaacaagaacgcaccaagaacaca |
192 |
Q |
| |
|
||||| |||||||||| ||||||| |||||||||||| |||| ||||||| ||| | | ||| |||||||| ||||||| |||||||||| || |
|
|
| T |
26841621 |
gaaaccgccttgaaaacaaccacaaccgcaagctacgatattgaaaaaatccagccgccggcgcaaccatcggaaaaa-caagaacacaccaagaaccca |
26841523 |
T |
|
| Q |
193 |
ttctttctgcgaaatcagcgccgagagaacagtgactagaggtgatgcggatggttgttccatcttcgcaccttcagccaccacggccgtttacattgtg |
292 |
Q |
| |
|
| || || |||||||| ||||||||||| |||||| || |||||||||||||| |||||||| |||||||| |||||||||| ||||||||||| || |
|
|
| T |
26841522 |
tcctctcgacgaaatcaacgccgagagaatagtgaccagtggtgatgcggatggctgttccatattcgcaccatcagccacca---ccgtttacattatg |
26841426 |
T |
|
| Q |
293 |
aaccaaaggaatttggaaagaaggg |
317 |
Q |
| |
|
||||||| ||||||||||||||||| |
|
|
| T |
26841425 |
aaccaaaagaatttggaaagaaggg |
26841401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 71; Significance: 4e-32; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 1654001 - 1654123
Alignment:
| Q |
1 |
cccaccaaaaactagctcgaaaatagccataaatggaacatatctgaacaccactaaaacaaaccatggaaa-cgtatagaggagatgaagaaaccatca |
99 |
Q |
| |
|
|||||||||||| |||||||||| ||||||||| ||||||||||||||||||||| ||||| |||||||||| | || ||||||||||||||||||| || |
|
|
| T |
1654001 |
cccaccaaaaacaagctcgaaaacagccataaaaggaacatatctgaacaccactcaaacacaccatggaaaccatacagaggagatgaagaaaccacca |
1654100 |
T |
|
| Q |
100 |
aaaaccaccttgaaaaccaccac |
122 |
Q |
| |
|
||| |||||| ||||||||||| |
|
|
| T |
1654101 |
caaatcaccttaaaaaccaccac |
1654123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 230 - 319
Target Start/End: Original strand, 1654178 - 1654263
Alignment:
| Q |
230 |
agaggtgatgcggatggttgttccatcttcgcaccttcagccaccacggccgtttacattgtgaaccaaaggaatttggaaagaaggggc |
319 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| || ||||| ||||||||||||| ||||||||| |||||||||||||||||| |
|
|
| T |
1654178 |
agaggtgatgcggatggtt-ttccatcttcgcaccaccacccacc---gccgtttacattgagaaccaaagaaatttggaaagaaggggc |
1654263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 122 - 188
Target Start/End: Complemental strand, 52991636 - 52991569
Alignment:
| Q |
122 |
caagctacgatattggaaaa-cccagccgtcggagtacccaccggaaaaaacaagaacgcaccaagaa |
188 |
Q |
| |
|
||||||||||||||| |||| |||||||| || | | ||||||||||||||||||| |||||||||| |
|
|
| T |
52991636 |
caagctacgatattgaaaaaacccagccgccgacgcaaccaccggaaaaaacaagaatgcaccaagaa |
52991569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0127 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0127
Description:
Target: scaffold0127; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 201 - 275
Target Start/End: Original strand, 22302 - 22376
Alignment:
| Q |
201 |
gcgaaatcagcgccgagagaacagtgactagaggtgatgcggatggttgttccatcttcgcaccttcagccacca |
275 |
Q |
| |
|
||||||||| |||| |||||||| |||| |||||||||||||||| ||||||||||||||||| ||||||||| |
|
|
| T |
22302 |
gcgaaatcaccgccaagagaacaaggactggaggtgatgcggatggatgttccatcttcgcaccaccagccacca |
22376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 201 - 275
Target Start/End: Complemental strand, 5745566 - 5745492
Alignment:
| Q |
201 |
gcgaaatcagcgccgagagaacagtgactagaggtgatgcggatggttgttccatcttcgcaccttcagccacca |
275 |
Q |
| |
|
||||||||| |||| |||||||| ||| |||||||||||||||| ||||||||||||||||| ||||||||| |
|
|
| T |
5745566 |
gcgaaatcaccgccaagagaacaaggaccggaggtgatgcggatggatgttccatcttcgcaccaccagccacca |
5745492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University