View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4082_low_33 (Length: 306)
Name: NF4082_low_33
Description: NF4082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4082_low_33 |
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| [»] scaffold0744 (1 HSPs) |
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Alignment Details
Target: scaffold0744 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: scaffold0744
Description:
Target: scaffold0744; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 18 - 297
Target Start/End: Original strand, 3255 - 3534
Alignment:
| Q |
18 |
accaatgcttggaatatggatcacccacactgccacggaaacgtaacttgcttataacctttcatcaccttgccacctgaaatacaaattgtctctccac |
117 |
Q |
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| T |
3255 |
accaatgcttggaatatggatcacccacactgccacggaaacgtaacttgcttataacctttcatcaccttgccacctgaaatacaaattgtctctccac |
3354 |
T |
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| Q |
118 |
cattacttgtcttcaagcaagtagcttctttcgttggcgcaaaaccaacaattagcgtttgttatttctcattgaccaacaaaaccaaccattcttgatc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3355 |
cattacttgtcttcaagcaagtagcttctttcgttggcgcaaaaccaacaattagcgtttgttatttctcattgaccaacaaaaccaaccattcttgatc |
3454 |
T |
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| Q |
218 |
aattatgctacgagtgtattaatttgcaacaaccatgtcttactacatgcatacatggtctaaataatacccaattcatc |
297 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3455 |
aattatgctatgagtgtattaatttgcaacaaccatgtcttactacatgcatacatggtctaaataatacccaattcatc |
3534 |
T |
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Target: chr5 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 18 - 297
Target Start/End: Original strand, 27769407 - 27769685
Alignment:
| Q |
18 |
accaatgcttggaatatggatcacccacactgccacggaaacgtaacttgcttataacctttcatcaccttgccacctgaaatacaaattgtctctccac |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| |||||||| |
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| T |
27769407 |
accaatgcttggaatatggatcacccacactgccacggaaacgtaacttgcttataacctttcattaccttgccacc-gaaatacaaattgcctctccac |
27769505 |
T |
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| Q |
118 |
cattacttgtcttcaagcaagtagcttctttcgttggcgcaaaaccaacaattagcgtttgttatttctcattgaccaacaaaaccaaccattcttgatc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27769506 |
cattacttgtcttcaagcaagtagcttctttcgttggcgcaaaaccaacaattagcgtttgttatttctcattgaccaacaaaaccaaccattcttgatc |
27769605 |
T |
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| Q |
218 |
aattatgctacgagtgtattaatttgcaacaaccatgtcttactacatgcatacatggtctaaataatacccaattcatc |
297 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
27769606 |
aattatgctatgagtgtattaatttgcaacaaccatgtcttagtacatgcatacatggtctaaataatacccaattcatc |
27769685 |
T |
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