View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4082_low_39 (Length: 252)
Name: NF4082_low_39
Description: NF4082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4082_low_39 |
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| [»] chr3 (1 HSPs) |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 8 - 252
Target Start/End: Original strand, 499774 - 500018
Alignment:
| Q |
8 |
agcagcacagaaaattgttaatgaaaa-catagacaccaggaagtcaaaattaagatacaattcccactaaatatcctccatgatcctaaatgatctaca |
106 |
Q |
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| T |
499774 |
agcaacacagaaaattgttaatgaaaaacatagataccgggaagtcaaaattaggatacaattcc-actaaatatcctccatgatcctaaatgatctaca |
499872 |
T |
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| Q |
107 |
ctagttgaaaccatgacacaactaagcaacaagaaaagaaaaccgaggcatacctctaatatggtgggtatgttgaacatcgtagaggagagaataaaat |
206 |
Q |
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| T |
499873 |
ctagttgaaagcatgacacaactaagcaacaagaaaagaaaactgaggcatacctctaatatggtgggtatgttgaacaacgtagaggagagaataaaat |
499972 |
T |
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| Q |
207 |
ttattacactggttccacgatcaattgtttgacttaatgcaccagt |
252 |
Q |
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| T |
499973 |
ttattacactgcttcgacgatcaattgtttgacttaatgcaccagt |
500018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 143; Significance: 3e-75; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 18 - 252
Target Start/End: Original strand, 32329212 - 32329457
Alignment:
| Q |
18 |
aaaattgttaatgaaaacatagacaccaggaagtcaaaattaa--------gatacaattcccactaaatatcctccatgatcctaaatgatctacacta |
109 |
Q |
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| T |
32329212 |
aaaattgttcatgaaaacatagacaccaggaagtcaaaattaagtatttaagatacaattcccactagatatcctccgtgatcctaaatggtctacacta |
32329311 |
T |
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| Q |
110 |
gttgaaaccatgacacaactaagcaacaagaaaagaaaaccgaggcatacctctaatatggtggg---tatgttgaacatcgtagaggagagaataaaat |
206 |
Q |
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| T |
32329312 |
gttgaaagcgtgactcaactaagcaacatgaaaagaaaactgaggcatacctctaatatggtgggtactatgttgaacaacgtagaggagagaataaaat |
32329411 |
T |
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| Q |
207 |
ttattacactggttccacgatcaattgtttgacttaatgcaccagt |
252 |
Q |
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| T |
32329412 |
ttattgcaccgctaccacgatcaattgttcgacttaatgcaccagt |
32329457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 25 - 252
Target Start/End: Original strand, 32342721 - 32342950
Alignment:
| Q |
25 |
ttaatgaaaacatagacaccaggaagtcaaaatt-aagatacaattcccactaaatatcctccatgatcctaaatgatctacactagttgaaaccatgac |
123 |
Q |
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| T |
32342721 |
ttaatgaaaacatagacaccaggaagtcaaaggtgaagatacaattcccactaaatatctttcatgatccaaaatgatctacacaagggaaaaacatgag |
32342820 |
T |
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| Q |
124 |
acaactaagcaacaagaaaagaaaaccgaggcatacctctaatatggtgg---gtatgttgaacatcgtagaggagagaataaaatttattacactggtt |
220 |
Q |
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| T |
32342821 |
tcacctaagaaacaagaaa--aaaactgagacatacctctattatggtaggtagtacattgaacaccatagcggagagaatgaaatttattgcacgacta |
32342918 |
T |
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| Q |
221 |
ccacgatcaattgtttgacttaatgcaccagt |
252 |
Q |
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| T |
32342919 |
ccacgatcaattattcgacttaatgcaccagt |
32342950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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