View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4082_low_42 (Length: 247)
Name: NF4082_low_42
Description: NF4082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4082_low_42 |
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Alignment Details
Target: chr8 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 40577994 - 40577934
Alignment:
| Q |
1 |
gagttcagaggaagagtcatagacaagttgagcttctttctccgatcccaaaaccaccttc |
61 |
Q |
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| T |
40577994 |
gagttcagaggaagagtcatagacaagttgagcttctttctccgatcccaaaaccaccttc |
40577934 |
T |
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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 202 - 231
Target Start/End: Complemental strand, 40577793 - 40577764
Alignment:
| Q |
202 |
ggtgcagcctaaggttatcatagtgattct |
231 |
Q |
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| T |
40577793 |
ggtgcagcctaaggttatcatagtgattct |
40577764 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 3 - 51
Target Start/End: Complemental strand, 45390943 - 45390895
Alignment:
| Q |
3 |
gttcagaggaagagtcatagacaagttgagcttctttctccgatcccaa |
51 |
Q |
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| T |
45390943 |
gttcagaagaagagtcatagaaaggttgagcttctttctccgatcccaa |
45390895 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 51
Target Start/End: Complemental strand, 45386574 - 45386526
Alignment:
| Q |
3 |
gttcagaggaagagtcatagacaagttgagcttctttctccgatcccaa |
51 |
Q |
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||||||| ||||||||| || | ||||||||||||||||||||||||| |
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| T |
45386574 |
gttcagaagaagagtcacaggaaggttgagcttctttctccgatcccaa |
45386526 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 51
Target Start/End: Complemental strand, 734551 - 734503
Alignment:
| Q |
3 |
gttcagaggaagagtcatagacaagttgagcttctttctccgatcccaa |
51 |
Q |
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||||||| |||||||||||| | ||||||||||||||||||||||||| |
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| T |
734551 |
gttcagaagaagagtcataggaaggttgagcttctttctccgatcccaa |
734503 |
T |
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