View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4082_low_47 (Length: 236)
Name: NF4082_low_47
Description: NF4082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4082_low_47 |
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Alignment Details
Target: chr4 (Bit Score: 182; Significance: 2e-98; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 27 - 220
Target Start/End: Original strand, 44868970 - 44869163
Alignment:
| Q |
27 |
caagatttgcgacatgacacaaggtgctgttcgtatgccacaagaattgcctcctctcttgcaacttcctgccgggttgtgcaagaaaaatggcgcatgt |
126 |
Q |
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| T |
44868970 |
caagatttgcgacatggcacaatgtgctgttcgtaggccacaagaattgcctcctctcttgcaacttcctgccgggttgtgcaagaaaaatggcgcatgt |
44869069 |
T |
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| Q |
127 |
ccttttaacataatcttcacagctgacaatcaatcctttgcacagagtatgatgttttttgttattattgtttttcaaatttcaatggcttcct |
220 |
Q |
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| T |
44869070 |
ccttttaacataatcttcacagctgacaatcaatcctttgcacagagtatgatgttttttgttattattgtttttcaaatttcaatggcttcct |
44869163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 70 - 176
Target Start/End: Original strand, 44858441 - 44858547
Alignment:
| Q |
70 |
gaattgcctcctctcttgcaacttcctgccgggttgtgcaagaaaaatggcgcatgtccttttaacataatcttcacagctgacaatcaatcctttgcac |
169 |
Q |
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| T |
44858441 |
gaatggcctcctctcttgcaacttcctactgtgttgtgcaaggaaaatgcttcctgtcgttttaacatgcttttcaccgccgacaatcactcctttgcac |
44858540 |
T |
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| Q |
170 |
agagtat |
176 |
Q |
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||||||| |
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| T |
44858541 |
agagtat |
44858547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 63 - 176
Target Start/End: Original strand, 44845465 - 44845578
Alignment:
| Q |
63 |
gccacaagaattgcctcctctcttgcaacttcctgccgggttgtgcaagaaaaatggcgcatgtccttttaacataatcttcacagctgacaatcaatcc |
162 |
Q |
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| T |
44845465 |
gccacatgaatggcctcctctctttcaacttcctcccgtgtattgcaaggaaaatgtttcctgtgcttttaacatgcttttcacctccgacaatcaatcc |
44845564 |
T |
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| Q |
163 |
tttgcacagagtat |
176 |
Q |
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| T |
44845565 |
tttgcacagagtat |
44845578 |
T |
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