View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4082_low_5 (Length: 629)

Name: NF4082_low_5
Description: NF4082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4082_low_5
NF4082_low_5
[»] chr1 (5 HSPs)
chr1 (1-629)||(31770283-31770912)
chr1 (1-176)||(7607723-7607898)
chr1 (1-136)||(14184934-14185069)
chr1 (569-626)||(14184882-14184939)
chr1 (601-629)||(7607896-7607924)
[»] chr4 (1 HSPs)
chr4 (93-629)||(41810403-41810939)
[»] scaffold0096 (1 HSPs)
scaffold0096 (11-443)||(28298-28734)
[»] chr3 (2 HSPs)
chr3 (11-318)||(12537848-12538162)
chr3 (569-629)||(52131001-52131061)
[»] chr5 (2 HSPs)
chr5 (26-238)||(12870619-12870830)
chr5 (333-443)||(16253045-16253157)
[»] chr6 (1 HSPs)
chr6 (26-238)||(27765782-27765994)
[»] chr7 (2 HSPs)
chr7 (576-629)||(37362394-37362448)
chr7 (96-168)||(6666712-6666784)
[»] chr2 (1 HSPs)
chr2 (11-86)||(32279926-32280001)
[»] scaffold0003 (1 HSPs)
scaffold0003 (11-86)||(35947-36022)


Alignment Details
Target: chr1 (Bit Score: 497; Significance: 0; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 497; E-Value: 0
Query Start/End: Original strand, 1 - 629
Target Start/End: Original strand, 31770283 - 31770912
Alignment:
1 agctctaacgtagaatctattttgctagaaccatctagtaagataaattctgacctaatagaagaggtattgaagattcaattgagagaaaaagaaaaat 100  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
31770283 agctctaacgtagaatctattttgatagaaccatctagtaagataaattctgacctaatagaagaggtattgaagattcaattgagagaaaaagaaaaat 31770382  T
101 gttttgcaaagataaagtggtggtagagatttctaaaccttaacaaactgatagaaattagagaaaaatagtgagacagtgagtacctaaaactgatgca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||    
31770383 gttttgcaaagataaagtggtggtagagatttctaaaccttaacaaattgatagaaattagagaaaaatagtgagagagtgagtacctaaaactgatgca 31770482  T
201 aaatattcaatctgaaccatcgtactccaatcctcacactctgatacttacaatttcaccgaattccaattgaatatcaccaatttactctggaaagtta 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
31770483 aaatattcaatctgaaccatcgtactccaatcctcacactctgatacttacaatttcaccgaattccaattgaatatcaccaatttactctagaaagtta 31770582  T
301 ttcagaaattaaaatcct-nnnnnnnnnnnnncaacgcaataccaaaaacatcaagattccaccgttacgaagacttcaatggcaacgaaatcggaaaag 399  Q
    ||||||||||||||||||              |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
31770583 ttcagaaattaaaatcctaaaaataaaaaaaacaacgcaataccaaaaacatcaaggttccaccgttacgaagacttcaatggcaacgaaatcggaaaag 31770682  T
400 ttcaatgcgaagaagaaatggatggagcgaaccttgtatcgaaggtgctggtaagnnnnnnnnnnnnnnncaacatcaggaagatatacagtacagaaat 499  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||               ||||||||||||||||||||||||||||||    
31770683 ttcaatgcgaagaagaaatggatggagcgaaccttgtatcgaaggtgctggtaagaaaaaaccaaaaaaacaacatcaggaagatatacagtacagaaat 31770782  T
500 tacagcaacnnnnnnntgggagactcatacccgtcaaagcatggtaggaaagcaatatatctacaatacttctcatttgaagatgtataatcaaaagtga 599  Q
    |||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
31770783 tacagcaacaaaaaaatgggagactcatacccgtcaaagcatggtaggaaagcaatatatctacaatacttctcatttgaagatgtataatcaaaagtga 31770882  T
600 cagagggagaagaagagggaagcatggggc 629  Q
    ||||||||||||||||||||||||||||||    
31770883 cagagggagaagaagagggaagcatggggc 31770912  T

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Target: chr1; HSP #2
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 1 - 176
Target Start/End: Original strand, 7607723 - 7607898
Alignment:
1 agctctaacgtagaatctattttgctagaaccatctagtaagataaattctgacctaatagaagaggtattgaagattcaattgagagaaaaagaaaaat 100  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
7607723 agctctaacgtagaatctattttgatagaaccatctagtaagataaattatgacctaatagaagaggtattgaagattcaattgagagaaaaagaaaaat 7607822  T
101 gttttgcaaagataaagtggtggtagagatttctaaaccttaacaaactgatagaaattagagaaaaatagtgaga 176  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
7607823 gttttgcaaagataaagtggtggtagagatttctaaaccttaacaaattgatagaaattagagaaaaatagtgaga 7607898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 14185069 - 14184934
Alignment:
1 agctctaacgtagaatctattttgctagaaccatctagtaagataaattctgacctaatagaagaggtattgaagattcaattgagagaaaaagaaaaat 100  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
14185069 agctctaacgtagaatctattttgatagaaccatctagtaagataaattctgacctaatagaagaggtattgaagattcaattgagagaaaaagaaaaat 14184970  T
101 gttttgcaaagataaagtggtggtagagatttctaa 136  Q
    ||||||||||||||||||||||||||||||||||||    
14184969 gttttgcaaagataaagtggtggtagagatttctaa 14184934  T

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Target: chr1; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 569 - 626
Target Start/End: Complemental strand, 14184939 - 14184882
Alignment:
569 ttctcatttgaagatgtataatcaaaagtgacagagggagaagaagagggaagcatgg 626  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
14184939 ttctaatttgaagatgtataatcaaaagtgacagagggagaagaagagggaagcatgg 14184882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 601 - 629
Target Start/End: Original strand, 7607896 - 7607924
Alignment:
601 agagggagaagaagagggaagcatggggc 629  Q
    |||||||||||||||||||||||||||||    
7607896 agagggagaagaagagggaagcatggggc 7607924  T

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Target: chr4 (Bit Score: 408; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 93 - 629
Target Start/End: Complemental strand, 41810939 - 41810403
Alignment:
93 agaaaaatgttttgcaaagataaagtggtggtagagatttctaaaccttaacaaactgatagaaattagagaaaaatagtgagacagtgagtacctaaaa 192  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||    
41810939 agaaaaatgttttgcaaagataaagtggtgttagagatttctaaaccttaacaaattgatagaaattagagaaaaatagtgagagagtgagtacctaaaa 41810840  T
193 ctgatgcaaaatattcaatctgaaccatcgtactccaatcctcacactctgatacttacaatttcaccgaattccaattgaatatcaccaatttactctg 292  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
41810839 ctgatgcaaaatattcaatctgaaccatcgtactccaatcctcacactctgatacttacaatttcaccgaattccaattgaatatcaccaatttactcta 41810740  T
293 gaaagttattcagaaattaaaatcctnnnnnnnnnnnnncaacgcaataccaaaaacatcaagattccaccgttacgaagacttcaatggcaacgaaatc 392  Q
    ||||||||||||||||||||||||||             |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
41810739 gaaagttattcagaaattaaaatcctaaaaataaaaaaacaacgcaataccaaaaacatcaaggttccaccgttacgaagacttcaatggcaacgaaatc 41810640  T
393 ggaaaagttcaatgcgaagaagaaatggatggagcgaaccttgtatcgaaggtgctggtaagnnnnnnnnnnnnnnncaacatcaggaagatatacagta 492  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||               |||||||||||||||||||||||    
41810639 ggaaaagttcaatgcgaagaagaaatggatggagcgaaccttgtatcgaaggtgctggtaagaaaaaaccaaaaaaacaacatcaggaagatatacagta 41810540  T
493 cagaaattacagcaacnnnnnnntgggagactcatacccgtcaaagcatggtaggaaagcaatatatctacaatacttctcatttgaagatgtataatca 592  Q
    ||||||||||||||||       ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
41810539 cagaaattacagcaacaaaaaaatgggagactcatacccgtcaaagcatggtagtaaagcaatatatctacaatacttctcatttgaagatgtataatca 41810440  T
593 aaagtgacagagggagaagaagagggaagcatggggc 629  Q
    |||||||||||||||||||||||||||||||||||||    
41810439 aaagtgacagagggagaagaagagggaagcatggggc 41810403  T

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Target: scaffold0096 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 11 - 443
Target Start/End: Complemental strand, 28734 - 28298
Alignment:
11 tagaatctattttgctagaaccatctagtaagataaattctgacctaatagaagaggtattgaagattcaattgagagaaaaagaaaaatgttttgcaaa 110  Q
    ||||||| |||||| |||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
28734 tagaatccattttgatagaaccatcaagtaagatagattctgacctaatagaagaggtattgaagattcaattgagagaaaaagaaaa-tgttttgcaaa 28636  T
111 gataaagtggtggtagagatttctaaaccttaacaaactgatagaaattagagaaaaatagtgagacagtgagtacctaaaactgatgcaaaatattcaa 210  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| || ||||||||||||||||| |||||||||| |    
28635 gataaagtggtggtagagatttctaaaccttaacaaattgatagaaattagagaaaaatagtgagagagggagtacctaaaactgatacaaaatattcca 28536  T
211 tctgaaccatcgtactccaatcctcaca--------ctctgatacttacaatttcaccgaattccaattg-aatatcaccaatttactctggaaagttat 301  Q
    |||||||||| ||||||||||||| |||        ||| ||||| ||||||| ||| |||||||||||| ||||||||||||||||| | ||||| |||    
28535 tctgaaccat-gtactccaatccttacactccgaatctccgatacatacaattacacagaattccaattgaaatatcaccaatttactttagaaagctat 28437  T
302 tcagaaattaaaatcctnnnnnnnnnnnnncaacgcaataccaaaaacatcaagattccaccgttacgaagacttcaatggcaacgaaatcggaaaagtt 401  Q
       ||||||||||||||             ||||||||| || |||| |||||||||| || |||||||| | |||  | ||||| |||||||||||||     
28436 catgaaattaaaatcctaaaaaaaaaaaaacaacgcaatgcccaaaatatcaagattctacagttacgaaaatttcgtttgcaacaaaatcggaaaagtg 28337  T
402 caatgcgaagaagaaatggatggagcgaaccttgtatcgaag 443  Q
    ||||||    | |||||||||||||||||||||  |||||||    
28336 caatgc---aacgaaatggatggagcgaaccttaaatcgaag 28298  T

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Target: chr3 (Bit Score: 172; Significance: 4e-92; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 172; E-Value: 4e-92
Query Start/End: Original strand, 11 - 318
Target Start/End: Original strand, 12537848 - 12538162
Alignment:
11 tagaatctattttgctagaaccatctagtaagataaattctgacctaatagaagaggtattgaagattcaattgagagaaaaagaaaaatgttttgcaaa 110  Q
    ||||||| |||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
12537848 tagaatccattttgatagaaccatcaagtaagataaattctgacctaatagaagaggtattgaagattcaattgagagaaaaa-aaaaatgttttgcaaa 12537946  T
111 gataaagtggtggtagagatttctaaaccttaacaaactgatagaaattagagaaaaatagtgagacagtgagtacctaaaactgatgcaaaatattcaa 210  Q
    |||||||| ||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| |  ||||||||||||||||| |||||||||| |    
12537947 gataaagttgtggtggagatttctaaaccttaacaaattgatagaaattagagaaaaatagtgagagatggagtacctaaaactgatacaaaatattcca 12538046  T
211 tctgaaccatcgtactccaatcctcaca--------ctctgatacttacaatttcaccgaattccaattg-aatatcaccaatttactctggaaagttat 301  Q
    ||| |||||| ||||||||||||| |||        ||| |||||||||||||||||||| || |||||| |||||||||| |||||| | ||||| |||    
12538047 tctaaaccat-gtactccaatccttacactccgaatctccgatacttacaatttcaccgatttacaattgaaatatcaccagtttactttagaaagctat 12538145  T
302 tcagaaattaaaatcct 318  Q
       ||||||||||||||    
12538146 catgaaattaaaatcct 12538162  T

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Target: chr3; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 569 - 629
Target Start/End: Complemental strand, 52131061 - 52131001
Alignment:
569 ttctcatttgaagatgtataatcaaaagtgacagagggagaagaagagggaagcatggggc 629  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
52131061 ttctcatttgatgatgtataatcaaaagtgacagagggagaagaagagggaagcatggggc 52131001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 101; Significance: 1e-49; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 26 - 238
Target Start/End: Complemental strand, 12870830 - 12870619
Alignment:
26 tagaaccatctagtaagataaattctgacctaatagaagaggtattgaagattcaattgagagaaaaagaaaaatgttttgcaaagataaagtggtggta 125  Q
    |||||||| | ||||||||||||| |||||||| |||  | | |||||||||||||||||||||||| |||| ||| |||||||| ||||||| ||||||    
12870830 tagaaccaccgagtaagataaattatgacctaacagataaagaattgaagattcaattgagagaaaa-gaaagatgatttgcaaatataaagtagtggta 12870732  T
126 gagatttctaaaccttaacaaactgatagaaattagagaaaaatagtgagacagtgagtacctaaaactgatgcaaaatattcaatctgaaccatcgtac 225  Q
    |||||||||||||| ||||||| |||||||||||||||||||||||||||| |  | |||||||||| |||| ||| | |||| |||  ||| |||||||    
12870731 gagatttctaaaccctaacaaattgatagaaattagagaaaaatagtgagagaaggggtacctaaaattgattcaagaaattccatcccaacaatcgtac 12870632  T
226 tccaatcctcaca 238  Q
    |||||||||||||    
12870631 tccaatcctcaca 12870619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 333 - 443
Target Start/End: Original strand, 16253045 - 16253157
Alignment:
333 aacgcaataccaaaaacatcaagattccaccgttacgaagacttcaatgg--caacgaaatcggaaaagttcaatgcgaagaagaaatggatggagcgaa 430  Q
    |||||||| || |||| |||||||||| || |||||||| | |||  |||  |||||||||||||||||| |||||||  ||||||||||||||||||||    
16253045 aacgcaatgccgaaaatatcaagattctacggttacgaaaatttcgttggagcaacgaaatcggaaaagtgcaatgcggtgaagaaatggatggagcgaa 16253144  T
431 ccttgtatcgaag 443  Q
    ||||| |||||||    
16253145 ccttgaatcgaag 16253157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 94; Significance: 1e-45; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 26 - 238
Target Start/End: Complemental strand, 27765994 - 27765782
Alignment:
26 tagaaccatctagtaagataaattctgacctaatagaagaggtattgaagattcaattgagagaaaaagaaaaatgttttgcaaagataaagtggtggta 125  Q
    |||||||| | ||||||||||||| |||||||| ||| || | |||||||||||||||||||||||| |||| ||| |||||||| ||||||| || |||    
27765994 tagaaccaccgagtaagataaattatgacctaacagatgaagaattgaagattcaattgagagaaaa-gaaagatgatttgcaaatataaagtagtagta 27765896  T
126 gagatttctaaaccttaacaaactgatagaaattagagaaaaatagtgaga-cagtgagtacctaaaactgatgcaaaatattcaatctgaaccatcgta 224  Q
    |||||||| ||||| ||||||| ||||||||||||||||||||||||||||  || | |||||||||| |||| ||| | |||| |||  ||||||||||    
27765895 gagatttccaaaccctaacaaattgatagaaattagagaaaaatagtgagagaagggggtacctaaaattgattcaagaaattccatcccaaccatcgta 27765796  T
225 ctccaatcctcaca 238  Q
    || |||||||||||    
27765795 cttcaatcctcaca 27765782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 576 - 629
Target Start/End: Original strand, 37362394 - 37362448
Alignment:
576 ttgaagatgtataatcaaaa-gtgacagagggagaagaagagggaagcatggggc 629  Q
    |||||||||| ||||||||| ||||||||||||||||||||||||||||||||||    
37362394 ttgaagatgtttaatcaaaatgtgacagagggagaagaagagggaagcatggggc 37362448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 96 - 168
Target Start/End: Original strand, 6666712 - 6666784
Alignment:
96 aaaatgttttgcaaagataaagtggtggtagagatttctaaaccttaacaaactgatagaaattagagaaaaa 168  Q
    |||||| || ||||||||||| |||| |||||||||| |||||| ||| ||| |||||||||| |||| ||||    
6666712 aaaatggttggcaaagataaattggtagtagagatttgtaaaccctaataaattgatagaaatgagaggaaaa 6666784  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 11 - 86
Target Start/End: Complemental strand, 32280001 - 32279926
Alignment:
11 tagaatctattttgctagaaccatctagtaagataaattctgacctaatagaagaggtattgaagattcaattgag 86  Q
    ||||||| | |||| |||||||||  ||||||| ||||| ||||||||||||||||| ||| || |||||||||||    
32280001 tagaatccaatttgatagaaccattgagtaagaaaaattatgacctaatagaagaggaatttaaaattcaattgag 32279926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 11 - 86
Target Start/End: Original strand, 35947 - 36022
Alignment:
11 tagaatctattttgctagaaccatctagtaagataaattctgacctaatagaagaggtattgaagattcaattgag 86  Q
    ||||||| | |||| ||||| |||  ||||||| ||||| ||||||||||||||||| ||| || |||||||||||    
35947 tagaatccaatttgatagaaacattgagtaagaaaaattatgacctaatagaagaggaattcaaaattcaattgag 36022  T

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