View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4082_low_51 (Length: 234)
Name: NF4082_low_51
Description: NF4082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4082_low_51 |
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Alignment Details
Target: chr2 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 33541708 - 33541487
Alignment:
| Q |
1 |
ttataatgtgtttgatttacatggaaaaagagagaatggagcccttgattttgagtaagagttttgaattttgagaatatagcgaaactcttaagaaaca |
100 |
Q |
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| T |
33541708 |
ttataatgtgtttgatttacatggaaaaagagagaatggagcccttgattttgagtaagagttttgaattttgagaatatagcgaaactcttaagagaca |
33541609 |
T |
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| Q |
101 |
cagtttagagtcatagatatatgaaaatccataaaataagaagaagaaaaaagaagggatatgtatcaaaagttactaggtac--nnnnnnnactcagat |
198 |
Q |
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| T |
33541608 |
cagtttagagtcatagatatatgaaaatccataaaataagaagaa-aaaaaaaaagggatatgtatcaaaagttactaggtactttttttttactcagat |
33541510 |
T |
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| Q |
199 |
cagaagtttctagatgaaacttg |
221 |
Q |
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||||||||||||||||||||||| |
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| T |
33541509 |
cagaagtttctagatgaaacttg |
33541487 |
T |
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