View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4082_low_52 (Length: 233)
Name: NF4082_low_52
Description: NF4082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4082_low_52 |
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Alignment Details
Target: chr6 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 44 - 217
Target Start/End: Original strand, 33832904 - 33833077
Alignment:
| Q |
44 |
gcatataaagtagcataagagactaacaatggaactgtattcctcattcagaatcagaaccttgccaattgttcacattaggaatcaaacactaacaacc |
143 |
Q |
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| T |
33832904 |
gcatataaagaagcataagagactaacaatggaactgtattcctcattcagaatcagaaccttgccaattgttcacattaggaatcaaacactaacaacc |
33833003 |
T |
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| Q |
144 |
tacctaaaaagaaaaagttgtgttctcaccaccagaagtgtaggccatttcctcgactgagtaacccttatagt |
217 |
Q |
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| T |
33833004 |
tacctaaaaagaaaaagttgtgttctcaccaccagaagtgtaggccatttcctcgactgagtaacccttatagt |
33833077 |
T |
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Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 131 - 194
Target Start/End: Complemental strand, 43156999 - 43156936
Alignment:
| Q |
131 |
aacactaacaacctacctaaaaagaaaaagttgtgttctcaccaccagaagtgtaggccatttc |
194 |
Q |
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| T |
43156999 |
aacactaacaacctaccaaaaaaggaaaagtagtgtgctcaccagcagaagtataggccgtttc |
43156936 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 131 - 213
Target Start/End: Complemental strand, 43144638 - 43144556
Alignment:
| Q |
131 |
aacactaacaacctacctaaaaagaaaaagttgtgttctcaccaccagaagtgtaggccatttcctcgactgagtaaccctta |
213 |
Q |
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||||||||||||||||||||||||||||| | ||| ||||||| ||| || ||||||||||| || | |||||| |||||| |
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| T |
43144638 |
aacactaacaacctacctaaaaagaaaaattattgtgctcaccagcagcagaataggccatttcttcaagtgagtatccctta |
43144556 |
T |
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