View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4082_low_54 (Length: 225)

Name: NF4082_low_54
Description: NF4082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4082_low_54
NF4082_low_54
[»] chr6 (16 HSPs)
chr6 (18-207)||(4481964-4482153)
chr6 (18-176)||(4575585-4575743)
chr6 (33-208)||(4471015-4471190)
chr6 (18-176)||(4561792-4561950)
chr6 (31-176)||(4489050-4489195)
chr6 (80-208)||(4462308-4462436)
chr6 (31-176)||(4503146-4503291)
chr6 (39-190)||(3173119-3173270)
chr6 (33-173)||(4265912-4266052)
chr6 (39-176)||(4623437-4623574)
chr6 (33-173)||(4627283-4627423)
chr6 (33-172)||(4298353-4298492)
chr6 (90-176)||(4255551-4255637)
chr6 (33-170)||(4259031-4259168)
chr6 (40-105)||(4599364-4599429)
chr6 (39-111)||(4581209-4581281)
[»] scaffold0477 (1 HSPs)
scaffold0477 (38-190)||(3382-3534)
[»] chr5 (1 HSPs)
chr5 (33-161)||(24104236-24104368)
[»] scaffold0288 (1 HSPs)
scaffold0288 (40-167)||(2316-2443)
[»] chr7 (1 HSPs)
chr7 (33-194)||(3087857-3088018)
[»] chr8 (1 HSPs)
chr8 (39-168)||(20862665-20862794)
[»] scaffold0475 (1 HSPs)
scaffold0475 (40-126)||(2001-2087)


Alignment Details
Target: chr6 (Bit Score: 146; Significance: 5e-77; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 18 - 207
Target Start/End: Complemental strand, 4482153 - 4481964
Alignment:
Q  18 gaactttcgctatttctttgatgaacttcttgctaaaattcatgaatcttccagtgctggtattatccctccagttacctgcttagtttctgattgctac 117  Q
    |||||||||| | |||||||||||| |||| |||||| ||||||||||| ||| ||||||||||||||| ||||| || |||||||||||||||||||||    
T  4482153 gaactttcgccacttctttgatgaatttctggctaaacttcatgaatctgccactgctggtattatccccccagtcacttgcttagtttctgattgctac 4482054  T
Q  118 atgccatttacagtagatgctgccgaagaacatgcactcccaatcgttctcttttccccggtcagtgcatgttacttactctctacttct 207  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  4482053 atgccatttacagtagatgctgccgaagaacatgcactcccaattgttctcttttccccggtcagtgcatgttacttactctctacttct 4481964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 18 - 176
Target Start/End: Complemental strand, 4575743 - 4575585
Alignment:
Q  18 gaactttcgctatttctttgatgaacttcttgctaaaattcatgaatcttccagtgctggtattatccctccagttacctgcttagtttctgattgctac 117  Q
    |||||||||| | |||||||||||||||||||||||| |||| || ||| ||| ||||||| ||||||| ||||| || |||||||||||||||||||||    
T  4575743 gaactttcgccacttctttgatgaacttcttgctaaacttcaagactctgccactgctggtcttatccccccagtcacttgcttagtttctgattgctac 4575644  T
Q  118 atgccatttacagtagatgctgccgaagaacatgcactcccaatcgttctcttttcccc 176  Q
    ||||||||||||||||||||||| ||||||||||| |||||||| ||||| ||||||||    
T  4575643 atgccatttacagtagatgctgctgaagaacatgccctcccaattgttcttttttcccc 4575585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 33 - 208
Target Start/End: Complemental strand, 4471190 - 4471015
Alignment:
Q  33 ctttgatgaacttcttgctaaaattcatgaatcttccagtgctggtattatccctccagttacctgcttagtttctgattgctacatgccatttacagta 132  Q
    ||||| |||||||||| ||| | || |||  ||| ||| ||||||| |||||||||||||||| ||| || |||||||||| ||||||||||||||||||    
T  4471190 ctttggtgaacttcttactagacttgatgcctctgccactgctggtcttatccctccagttacttgcataatttctgattgttacatgccatttacagta 4471091  T
Q  133 gatgctgccgaagaacatgcactcccaatcgttctcttttccccggtcagtgcatgttacttactctctacttctc 208  Q
    |||||||| ||||||| |||||||||||||||||||||||| |||||||| ||||||| || |||| |||||||||    
T  4471090 gatgctgctgaagaacgtgcactcccaatcgttctcttttctccggtcagcgcatgttgctcactcactacttctc 4471015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 18 - 176
Target Start/End: Complemental strand, 4561950 - 4561792
Alignment:
Q  18 gaactttcgctatttctttgatgaacttcttgctaaaattcatgaatcttccagtgctggtattatccctccagttacctgcttagtttctgattgctac 117  Q
    |||||||| | | |||||||||||||||||||||||| |||| || ||| ||| ||||||| ||||||| ||||| || |||||||||||||||||||||    
T  4561950 gaactttcaccacttctttgatgaacttcttgctaaacttcaagactctgccactgctggtcttatccccccagtcacttgcttagtttctgattgctac 4561851  T
Q  118 atgccatttacagtagatgctgccgaagaacatgcactcccaatcgttctcttttcccc 176  Q
    |||||||||||||||| |||||| |||||||||||||||||| | ||||| ||||||||    
T  4561850 atgccatttacagtagctgctgctgaagaacatgcactcccagttgttcttttttcccc 4561792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 31 - 176
Target Start/End: Original strand, 4489050 - 4489195
Alignment:
Q  31 ttctttgatgaacttcttgctaaaattcatgaatcttccagtgctggtattatccctccagttacctgcttagtttctgattgctacatgccatttacag 130  Q
    ||||||| || | ||||||||||| || |||| ||| | | ||||||| |||||||||||||||| |||||||||||||||||| | ||| |||||||||    
T  4489050 ttctttggtgtatttcttgctaaacttaatgactctgctactgctggtcttatccctccagttacttgcttagtttctgattgcaatatggcatttacag 4489149  T
Q  131 tagatgctgccgaagaacatgcactcccaatcgttctcttttcccc 176  Q
    |||||||||| |||||||||||||||||||| ||||||||||||||    
T  4489150 tagatgctgctgaagaacatgcactcccaattgttctcttttcccc 4489195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 80 - 208
Target Start/End: Complemental strand, 4462436 - 4462308
Alignment:
Q  80 ttatccctccagttacctgcttagtttctgattgctacatgccatttacagtagatgctgccgaagaacatgcactcccaatcgttctcttttccccggt 179  Q
    |||||||||| ||||| ||| ||||||||||||| ||||||||||||||||| ||||| || ||| ||| ||||||||||||||||||||||||||||||    
T  4462436 ttatccctccggttacttgcatagtttctgattgttacatgccatttacagtggatgccgctgaacaacgtgcactcccaatcgttctcttttccccggt 4462337  T
Q  180 cagtgcatgttacttactctctacttctc 208  Q
    ||||||||||| || |||| |||||||||    
T  4462336 cagtgcatgttgctcactcactacttctc 4462308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 31 - 176
Target Start/End: Original strand, 4503146 - 4503291
Alignment:
Q  31 ttctttgatgaacttcttgctaaaattcatgaatcttccagtgctggtattatccctccagttacctgcttagtttctgattgctacatgccatttacag 130  Q
    ||||||| |||| |||||| |||| || |||| ||| ||| ||||||| |||||||||||||||| |||||||||||||||||| ||||||||||| |||    
T  4503146 ttctttggtgaatttcttgttaaacttaatgactctgccactgctggtcttatccctccagttacttgcttagtttctgattgcaacatgccatttccag 4503245  T
Q  131 tagatgctgccgaagaacatgcactcccaatcgttctcttttcccc 176  Q
    || ||||||| ||||||||| |||||||||| |||||| |||||||    
T  4503246 tatatgctgctgaagaacatacactcccaattgttctcgtttcccc 4503291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 39 - 190
Target Start/End: Complemental strand, 3173270 - 3173119
Alignment:
Q  39 tgaacttcttgctaaaattcatgaatcttccagtgctggtattatccctccagttacctgcttagtttctgattgctacatgccatttacagtagatgct 138  Q
    ||||||| |||||||| |||| || ||| | | ||||||| |||| ||||||||||| ||||| ||||| |||||||| ||||||||||||||||||| |    
T  3173270 tgaactttttgctaaacttcacgattctgcaactgctggtcttatacctccagttacttgctttgtttccgattgctatatgccatttacagtagatgtt 3173171  T
Q  139 gccgaagaacatgcactcccaatcgttctcttttccccggtcagtgcatgtt 190  Q
    || ||||||||||| |||||||| ||||| ||||| |||   ||||||||||    
T  3173170 gctgaagaacatgctctcccaattgttctattttcgccgtgtagtgcatgtt 3173119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 33 - 173
Target Start/End: Original strand, 4265912 - 4266052
Alignment:
Q  33 ctttgatgaacttcttgctaaaattcatgaatcttccagtgctggtattatccctccagttacctgcttagtttctgattgctacatgccatttacagta 132  Q
    |||||||||||||||| ||| | ||||| ||||| ||| || |||| |||| || ||| |||| ||||| ||||| ||||| |||||||| |||||| ||    
T  4265912 ctttgatgaacttcttactagacttcatcaatctgccaatgatggttttattccaccaattacttgcttggtttccgattgttacatgccttttacaata 4266011  T
Q  133 gatgctgccgaagaacatgcactcccaatcgttctcttttc 173  Q
    |||||||| ||||||||||||||||||||| || |||||||    
T  4266012 gatgctgcggaagaacatgcactcccaatccttttcttttc 4266052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 39 - 176
Target Start/End: Complemental strand, 4623574 - 4623437
Alignment:
Q  39 tgaacttcttgctaaaattcatgaatcttccagtgctggtattatccctccagttacctgcttagtttctgattgctacatgccatttacagtagatgct 138  Q
    |||||||||||| ||| ||||||| ||| ||| ||||||| || | || |||||||| ||||||||||| ||||| |||||| |||||||| || | |||    
T  4623574 tgaacttcttgcaaaacttcatgactctgccactgctggtcttgttccaccagttacttgcttagtttccgattgttacatgtcatttacaatacaagct 4623475  T
Q  139 gccgaagaacatgcactcccaatcgttctcttttcccc 176  Q
    || ||||| |||||||||||||| ||| |||| |||||    
T  4623474 gctgaagagcatgcactcccaattgttttcttctcccc 4623437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 33 - 173
Target Start/End: Complemental strand, 4627423 - 4627283
Alignment:
Q  33 ctttgatgaacttcttgctaaaattcatgaatcttccagtgctggtattatccctccagttacctgcttagtttctgattgctacatgccatttacagta 132  Q
    ||||| |||||||||||||||| ||||||| ||  ||| ||||||| || |  | |||||||| ||||||||||| ||||| |  ||| |||||||  ||    
T  4627423 ctttggtgaacttcttgctaaacttcatgactcagccactgctggtcttgttgcaccagttacttgcttagtttcagattgtttaatgtcatttaccata 4627324  T
Q  133 gatgctgccgaagaacatgcactcccaatcgttctcttttc 173  Q
     | ||||| |||||||||||||||||||| | |||||||||    
T  4627323 caagctgctgaagaacatgcactcccaattgctctcttttc 4627283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 33 - 172
Target Start/End: Original strand, 4298353 - 4298492
Alignment:
Q  33 ctttgatgaacttcttgctaaaattcatgaatcttccagtgctggtattatccctccagttacctgcttagtttctgattgctacatgccatttacagta 132  Q
    ||||| |||||||||||||||| ||| ||| ||| ||| ||||||| || | || |||||||| ||||||||| ||||||  |  ||| |||||||  ||    
T  4298353 ctttggtgaacttcttgctaaacttcgtgattctgccactgctggtcttgtaccaccagttacttgcttagttgctgattttttaatgtcatttaccata 4298452  T
Q  133 gatgctgccgaagaacatgcactcccaatcgttctctttt 172  Q
     | ||||| ||||||||||||||||||||  |||||||||    
T  4298453 caagctgcggaagaacatgcactcccaattattctctttt 4298492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 90 - 176
Target Start/End: Original strand, 4255551 - 4255637
Alignment:
Q  90 agttacctgcttagtttctgattgctacatgccatttacagtagatgctgccgaagaacatgcactcccaatcgttctcttttcccc 176  Q
    |||||| ||||||||||||||||| |||||| |||||||  || | ||||| ||||| |||||||||||||| |||||| |||||||    
T  4255551 agttacttgcttagtttctgattgttacatgtcatttaccatacaagctgctgaagagcatgcactcccaattgttctcctttcccc 4255637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 33 - 170
Target Start/End: Original strand, 4259031 - 4259168
Alignment:
Q  33 ctttgatgaacttcttgctaaaattcatgaatcttccagtgctggtattatccctccagttacctgcttagtttctgattgctacatgccatttacagta 132  Q
    ||||| |||||||||||||||| |||| || ||  ||| | |||||||| | || || ||||| ||||||||||||||||| |||||| ||||||   ||    
T  4259031 ctttggtgaacttcttgctaaacttcaagactcagccactactggtattgttccacctgttacttgcttagtttctgattgttacatgtcatttagtata 4259130  T
Q  133 gatgctgccgaagaacatgcactcccaatcgttctctt 170  Q
     | ||||| ||||| |||||||||||||| ||| ||||    
T  4259131 caagctgctgaagagcatgcactcccaattgttttctt 4259168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 105
Target Start/End: Complemental strand, 4599429 - 4599364
Alignment:
Q  40 gaacttcttgctaaaattcatgaatcttccagtgctggtattatccctccagttacctgcttagtt 105  Q
    ||||||||||||| | |  |||| ||||| | ||||||| |||||||||||||||| |||||||||    
T  4599429 gaacttcttgctagactctatgagtcttctactgctggtcttatccctccagttacttgcttagtt 4599364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 111
Target Start/End: Complemental strand, 4581281 - 4581209
Alignment:
Q  39 tgaacttcttgctaaaattcatgaatcttccagtgctggtattatccctccagttacctgcttagtttctgat 111  Q
    |||||||||||||| | || |||| ||| ||| | ||||| || ||||||||||||| ||| |||||||||||    
T  4581281 tgaacttcttgctagacttaatgactctgccacttctggtcttgtccctccagttacttgcatagtttctgat 4581209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0477 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: scaffold0477
Description:

Target: scaffold0477; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 38 - 190
Target Start/End: Original strand, 3382 - 3534
Alignment:
Q  38 atgaacttcttgctaaaattcatgaatcttccagtgctggtattatccctccagttacctgcttagtttctgattgctacatgccatttacagtagatgc 137  Q
    |||||||||||| |||| ||||||| ||| ||| ||||||| || | || | |||||| ||| ||||  ||||||| ||||||||||||||  || | ||    
T  3382 atgaacttcttgttaaacttcatgactctgccactgctggtcttgttccacaagttacttgcatagtcgctgattgttacatgccatttaccatacaagc 3481  T
Q  138 tgccgaagaacatgcactcccaatcgttctcttttccccggtcagtgcatgtt 190  Q
    ||| |||||||||||||||||||| |||||||||||| | | |||||||||||    
T  3482 tgctgaagaacatgcactcccaattgttctcttttccaccggcagtgcatgtt 3534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 33 - 161
Target Start/End: Complemental strand, 24104368 - 24104236
Alignment:
Q  33 ctttgatgaacttcttgctaaaattcatgaatcttccagtgctggtattatccctccagttacctgcttagtttctgattgctacatgccatttacag-- 130  Q
    |||||||||||||||| ||| | ||||| ||||| ||| || |||| |||| || ||| |||| ||||||||||| ||||| ||||||||||||||||      
T  24104368 ctttgatgaacttcttactagacttcatcaatctgccaatgatggtgttattccaccaattacttgcttagtttcggattgttacatgccatttacagtt 24104269  T
Q  131 --tagatgctgccgaagaacatgcactcccaat 161  Q
      | |||||||  ||||||||||||||||||||    
T  24104268 gatcgatgctgttgaagaacatgcactcccaat 24104236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0288 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: scaffold0288
Description:

Target: scaffold0288; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 40 - 167
Target Start/End: Original strand, 2316 - 2443
Alignment:
Q  40 gaacttcttgctaaaattcatgaatcttccagtgctggtattatccctccagttacctgcttagtttctgattgctacatgccatttacagtagatgctg 139  Q
    ||||||||||||| | || | || ||| ||| | ||||| ||||||||||||| ||  |||||||||||||||| |||||| |||||||  || | ||||    
T  2316 gaacttcttgctagacttgacgagtctgccaattctggtcttatccctccagtaactagcttagtttctgattgttacatgtcatttaccatacaagctg 2415  T
Q  140 ccgaagaacatgcactcccaatcgttct 167  Q
    | |||||| |||||||||||||| ||||    
T  2416 ctgaagaatatgcactcccaatccttct 2443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 33 - 194
Target Start/End: Complemental strand, 3088018 - 3087857
Alignment:
Q  33 ctttgatgaacttcttgctaaaattcatgaatcttccagtgctggtattatccctccagttacctgcttagtttctgattgctacatgccatttacagta 132  Q
    ||||| ||||||||||  |  ||||||||| ||| ||  ||||||| |||| || |||||||| ||||||||  ||||||  ||||||||||||||  ||    
T  3088018 ctttggtgaacttcttcgtcgaattcatgactctgccgatgctggtcttattccaccagttacttgcttagtagctgatttttacatgccatttaccata 3087919  T
Q  133 gatgctgccgaagaacatgcactcccaatcgttctcttttccccggtcagtgcatgttactt 194  Q
     | | ||| |||||  |||||||||||||| |||||||||| || | |||||||||| ||||    
T  3087918 caagttgctgaagagaatgcactcccaatccttctcttttcaccagccagtgcatgtaactt 3087857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 39 - 168
Target Start/End: Original strand, 20862665 - 20862794
Alignment:
Q  39 tgaacttcttgctaaaattcatgaatcttccagtgctggtattatccctccagttacctgcttagtttctgattgctacatgccatttacagtagatgct 138  Q
    |||||||||||| ||| ||||||| |||||||   ||||| |||| ||||| ||||| ||||||||||||||| | | |||| || ||||  || | | |    
T  20862665 tgaacttcttgccaaacttcatgactcttccaaatctggtcttatacctcctgttacttgcttagtttctgatagtttcatgtcagttaccatacaagtt 20862764  T
Q  139 gccgaagaacatgcactcccaatcgttctc 168  Q
    || ||||||| |||||||||||| ||||||    
T  20862765 gctgaagaacttgcactcccaattgttctc 20862794  T

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Target: scaffold0475 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0475
Description:

Target: scaffold0475; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 126
Target Start/End: Complemental strand, 2087 - 2001
Alignment:
Q  40 gaacttcttgctaaaattcatgaatcttccagtgctggtattatccctccagttacctgcttagtttctgattgctacatgccattt 126  Q
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T  2087 gaacttcttgctagacttgacgagtctgccaattctggtcttatccctccagtaactagcttagtttctgattgttacatgtcattt 2001  T

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