View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4082_low_56 (Length: 223)
Name: NF4082_low_56
Description: NF4082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4082_low_56 |
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Alignment Details
Target: chr2 (Bit Score: 126; Significance: 4e-65; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 1 - 126
Target Start/End: Complemental strand, 13888611 - 13888486
Alignment:
| Q |
1 |
agttgttttcctttggcaattgggaaccggggaactttatgttaacaatatatgatgctaaacataataaaagcatttccaatatgccatatgtttatac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13888611 |
agttgttttcctttggcaattgggaaccggggaactttatgttaacaatatatgatgctaaacataataaaagcatttccaatatgccatatgtttatac |
13888512 |
T |
|
| Q |
101 |
tgtttttataggtaaagttacatatt |
126 |
Q |
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|||||||||||||||||||||||||| |
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| T |
13888511 |
tgtttttataggtaaagttacatatt |
13888486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 1 - 126
Target Start/End: Complemental strand, 14028736 - 14028611
Alignment:
| Q |
1 |
agttgttttcctttggcaattgggaaccggggaactttatgttaacaatatatgatgctaaacataataaaagcatttccaatatgccatatgtttatac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14028736 |
agttgttttcctttggcaattgggaaccggggaactttatgttaacaatatatgatgctaaacataataaaagcatttccaatatgccatatgtttatac |
14028637 |
T |
|
| Q |
101 |
tgtttttataggtaaagttacatatt |
126 |
Q |
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|||||||||||||||||||||||||| |
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| T |
14028636 |
tgtttttataggtaaagttacatatt |
14028611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 95; Significance: 1e-46; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 7689556 - 7689438
Alignment:
| Q |
1 |
agttgttttcctttggcaattgggaaccggggaactttatgttaacaatatatgatgctaaacataataaaagcatttccaatatgccatatgtttatac |
100 |
Q |
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|||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| |
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| T |
7689556 |
agttgttttcctttggaaattgggaaccagggaactttatattaacaatatatgatgctaaacatagtaaaagcatttccaatatgtcatatgtttatac |
7689457 |
T |
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| Q |
101 |
tgtttttataggtaaagtt |
119 |
Q |
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||||||| ||||||||||| |
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| T |
7689456 |
tgtttttgtaggtaaagtt |
7689438 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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