View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4082_low_6 (Length: 590)
Name: NF4082_low_6
Description: NF4082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4082_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 504; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 504; E-Value: 0
Query Start/End: Original strand, 1 - 583
Target Start/End: Complemental strand, 49437844 - 49437264
Alignment:
| Q |
1 |
ttttgcaaacaatgtcaatctgtggtgttaaagctctcgaagttgaaagagaattatccttatgcccaagggtctctcctatatgtgaagttatactaaa |
100 |
Q |
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| T |
49437844 |
ttttgcaaacaatgtcaatctgtggtgttaaagctctcgaagttgaaagagaattatccttatgcccaagggtctctcctatatgtgaagttatactaaa |
49437745 |
T |
|
| Q |
101 |
tgcatataggttctccccagacagttcactttaatttgcttttatgatgcagctgctaggtttgttggtttgtaatgtgaaaccttgattgtcattaaat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
49437744 |
tgcatataggttctccccagacagttcactttaatttgcttttatgatgcagctgctaggtttgttggtttgtaatgtgaaaccttgattgtcatgaaat |
49437645 |
T |
|
| Q |
201 |
ttgtgttggtgcacaagtgaaggaaaaattatcccgtaaacttgtagacatannnnnnnataaacttgtttgttaccgaaattaagtctacaactttcca |
300 |
Q |
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| T |
49437644 |
ttgtgttggtgcacaagtgaaggaaaaattatcccgtaaacttgtagacat-tttttttataaacttgtttgttaccgaaattaagtctacaactttcca |
49437546 |
T |
|
| Q |
301 |
nnnnnnnggtttataaatttgttgaatccatttatcatacttcaattaaatttgttgaccttgtgtatgactttatccatttgttagaggtaaaacaaag |
400 |
Q |
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| T |
49437545 |
tttttt-ggtttataaatttgttgaatccatttatcatacttcaattaaatttgttgaccttgtgtatgactttatccatttgttagaggtaaaacaaag |
49437447 |
T |
|
| Q |
401 |
gggatgatcatgtatagtcttaggatcatttataaactacacatatgcaactttgaattctatctcaataagatcttccatttgaaagatccttatgttt |
500 |
Q |
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| T |
49437446 |
gggatgatcatgtatagtcttaggatcatttataaactacacatatgcaactttgaattctatctcaataagatcttccatttgaaagatctttatgttt |
49437347 |
T |
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| Q |
501 |
taaaatagttttttagccttggttagctcatcggtccacagctctgttttttgagtacaagtaaatacactctatattcttcg |
583 |
Q |
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| T |
49437346 |
taaaatagttttttacccttggttagctcatcggtccacagctctgttttttgagttcaagaaaatacactctatattgttcg |
49437264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 45 - 94
Target Start/End: Original strand, 43362425 - 43362474
Alignment:
| Q |
45 |
gaaagagaattatccttatgcccaagggtctctcctatatgtgaagttat |
94 |
Q |
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| T |
43362425 |
gaaagagaattgtccttatgtccaagggcctctcctacatgtgaagttat |
43362474 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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