View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4082_low_7 (Length: 521)
Name: NF4082_low_7
Description: NF4082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4082_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 453; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 17 - 510
Target Start/End: Original strand, 49686450 - 49686952
Alignment:
| Q |
17 |
attcccaaactgtggtgcatttggcaattcaaggttgtgacgatctcaacaaaactgctacgaaacacgtccagtttaccaaagga----------ttca |
106 |
Q |
| |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
49686450 |
attcccaaactgtggtgcatt-ggcaattcaaggttgtgacgatctcaacaaaactgctacgaaacacgtccagtttaccaaaggaggaaaacactttca |
49686548 |
T |
|
| Q |
107 |
agttacaaacattaaaaatgagcggtccaacactatttccattgttgatctgaatttcaccaagcttttgcagaaaaatgcttgcgaggcctttagctat |
206 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49686549 |
agttacaaacattaaaaatgagcggcccaacactatttccattgttgatctgaatttcaccaagcttttgcagaaaaatgcttgcgaggcctttagctat |
49686648 |
T |
|
| Q |
207 |
gatatcactctccctcctccctctccttttggaactttttatatgaaagacaacataacagctttcaaatgcagccatacccaaaaattagccagcaacc |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49686649 |
gatatcactctccctcctccctctccttttggaactttttatatgaaagacaacataacagctttcaaatgcagccatacccaaaaattagccagcaacc |
49686748 |
T |
|
| Q |
307 |
caccaaataatttcttcaaaaatagtacatgtcctcgctatgatttttacttcggtgattcaacaatatctaatgatgagtccaaccactctttcacgtc |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
49686749 |
caccaaataatttcttcaaaaatagtacatgtcctcgctatgatttttacttcggtgattcaacaatatctaatgatgagcccaaccactctttcacgtc |
49686848 |
T |
|
| Q |
407 |
ctgttttccgtttcatcttcctgtcattaaattaggttttgcactttctggtaacccatttcgattgttagctgatgaaattacctttaatttcaaatct |
506 |
Q |
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| T |
49686849 |
ctgttttccgtttcatcttcctgtcattaaattaggttttgcactttctggtaacccatttcgattgttagctgatgaaattacctttaatttcaaatct |
49686948 |
T |
|
| Q |
507 |
tcat |
510 |
Q |
| |
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|||| |
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| T |
49686949 |
tcat |
49686952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 148; E-Value: 7e-78
Query Start/End: Original strand, 134 - 510
Target Start/End: Original strand, 49690842 - 49691218
Alignment:
| Q |
134 |
caacactatttccattgttgatctgaatttcaccaagcttttgcagaaaaatgcttgcgaggcctttagctatg---atatcactctccctcctccctct |
230 |
Q |
| |
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|||||||||||||||| |||| | ||| |||||||||||||| ||||||||||||| ||||| || ||||||| |||| || |||||||||||| || |
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| T |
49690842 |
caacactatttccattattgaccccaatatcaccaagcttttggagaaaaatgcttgtgaggcattcagctatgttaatattaccctccctcctcccact |
49690941 |
T |
|
| Q |
231 |
ccttttggaactttttatatgaaagacaacataacagctttcaaatgcagccatacccaaaaattagccagcaacccaccaaataatttcttcaaaaata |
330 |
Q |
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|||||||||||||||| ||||||| || ||||||||||||||||||||| |||||||| |||||||| || |||| |||| ||||||||||| ||||| |
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| T |
49690942 |
ccttttggaactttttttatgaaaaactacataacagctttcaaatgcaaccatacccgaaaattaggcattcaccctccaagtaatttcttcataaata |
49691041 |
T |
|
| Q |
331 |
gtacatgtcctcgctatgatttttacttcggtgattcaacaatatctaatgatgagtccaaccactctttcacgtcctgttttccgtttcatcttcctgt |
430 |
Q |
| |
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|| | |||| || ||||||||||||||| || |||| |||||| | ||||||||||||||||||||||| |||||||| | || ||||||||||| |
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| T |
49691042 |
gttcttgtcatccctatgatttttactttggcgatt---caatatttgatgatgagtccaaccactctttcgtgtcctgttcgtcattgcatcttcctgt |
49691138 |
T |
|
| Q |
431 |
cattaaattaggttttgcactttctggtaacccatttcgattgttagctgatgaaattacctttaatttcaaatcttcat |
510 |
Q |
| |
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|| | ||||||| ||||||||||| ||||||||||||| || ||| || |||||||||||||| | ||| ||||||||| |
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| T |
49691139 |
caatgaattaggctttgcactttccggtaacccatttccctttttaactaatgaaattacctttcagttccaatcttcat |
49691218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 17 - 510
Target Start/End: Original strand, 49679075 - 49679584
Alignment:
| Q |
17 |
attcccaaactgtggtgcatttggcaattcaaggttgtgacgatctcaacaaaactgctacgaaacacgtccagtttaccaaagga----------ttca |
106 |
Q |
| |
|
|||||||| ||||||| |||| |||||||||||||||||| |||||||||||||||||| ||| ||||||||||| ||||||||| |||| |
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| T |
49679075 |
attcccaagctgtggtacatt-ggcaattcaaggttgtgataatctcaacaaaactgctatgaagcacgtccagttaaccaaaggaggaaaactctttca |
49679173 |
T |
|
| Q |
107 |
agttacaaacattaaaaatgagcggtcca------acactatttccattgttgatctgaatttcaccaagcttttgcagaaaaatgcttgcgaggccttt |
200 |
Q |
| |
|
||||||||||||| | ||| |||||| |||||||||||||| |||| | ||| |||||||||||||| |||| |||||||| ||||| || |
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| T |
49679174 |
agttacaaacattgataatcgcgggtccattggcaacactatttccattattgaccccaatatcaccaagcttttggagaagaatgcttgtgaggcattc |
49679273 |
T |
|
| Q |
201 |
agctatg---atatcactctccctcctccctctccttttggaactttttat-atgaaagacaacataacagctttcaaatgcagccatacccaaaaatta |
296 |
Q |
| |
|
||| ||| |||| || |||| |||| ||||||||||||||||||||| | |||||| || ||||||||||||||||||||| || ||||| ||||||| |
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| T |
49679274 |
agccatgttaatattacactccttccttcctctccttttggaacttttttttatgaaaaactacataacagctttcaaatgcaaccgtacccgaaaatta |
49679373 |
T |
|
| Q |
297 |
gccagcaacccaccaaataatttcttcaaaaatagtacatgtcctcgctatgatttttacttcggtgattcaacaatatctaatgatgagtccaaccact |
396 |
Q |
| |
|
| || | | || |||| ||||||||||| ||||||| | |||| || ||||||||||||||| || |||| |||||| | |||||||||||||||||| |
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|
| T |
49679374 |
ggcatccaacctccaagtaatttcttcagaaatagttcttgtcatccctatgatttttactttggcgatt---caatatttgatgatgagtccaaccact |
49679470 |
T |
|
| Q |
397 |
ctttcacgtcctgttttccgtttcatcttcctgtcattaaattaggttttgcactttctggtaacccatttcgattgttagctgatgaaattacctttaa |
496 |
Q |
| |
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||||| |||||||| | || ||||||||||||| | ||||||| ||||||||||| || || ||||||| ||| |||| |||| |||| |||||| | |
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| T |
49679471 |
ctttcgtgtcctgttcgtcattgcatcttcctgtcaatgaattaggctttgcactttccggcaatccatttccattcttagatgatcaaataacctttca |
49679570 |
T |
|
| Q |
497 |
tttcaaatcttcat |
510 |
Q |
| |
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|||||| |||||| |
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| T |
49679571 |
gttcaaaccttcat |
49679584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 17 - 99
Target Start/End: Original strand, 49690710 - 49690791
Alignment:
| Q |
17 |
attcccaaactgtggtgcatttggcaattcaaggttgtgacgatctcaacaaaactgctacgaaacacgtccagtttaccaaa |
99 |
Q |
| |
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|||||||| |||||||||||| |||||||||||||||||| |||||||||||||||||| ||| | |||||||| |||||| |
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| T |
49690710 |
attcccaagctgtggtgcatt-ggcaattcaaggttgtgataatctcaacaaaactgctatgaagtatgtccagttaaccaaa |
49690791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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